Pseudomonas koreensis: AYO71_22825
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Entry
AYO71_22825 CDS
T04647
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYO71_22825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkr03019
]
AYO71_22825
03009 Ribosome biogenesis [BR:
pkr03009
]
AYO71_22825
Enzymes [BR:
pkr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYO71_22825
Messenger RNA biogenesis [BR:
pkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYO71_22825
Ribosome biogenesis [BR:
pkr03009
]
Prokaryotic type
rRNA processing factors
AYO71_22825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AMT90242
LinkDB
All DBs
Position
5090185..5093466
Genome browser
AA seq
1093 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAPAAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPAAPVAVAKPAATERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERQPRETREPRETRSEAPVAREERA
PRAPREERAPRAPREDRKPRGEREERVRELREPLDAAPVAAVAAVTAEERPARQPREERA
PRAPREERQPRAEQAAAAVAEEEVNSNNEEQLPEDGQDNAEGDRPRRRSRGQRRRSNRRE
RQRDANGNVIEGSEESESAENAGEPSTADLAAGLAVTAAVASSTISAPAEAEAHEQAERA
TAATLETAPVEAPVVEATTPVEVTAAPEIEVAPVREAQPQVEAPAEPEAVVEAPVAESEP
ATETVSENVTKTVREVREEQTAFNWVAEPAVTETPAPVAEAEVPQAMVSEPVVAAAEPAP
EPVVEAPAVEAPVAKAQAEEAPAAVEAPAPVVEAPAPVSALTPNGRAPNDPREVRRRKRE
AERLQKEAELAAAAAPVAAEPAAAAEVIEAAPAPVAEEASLEAVIAEAPRSVQDAVEQRE
EAQEKEHEPKPLV
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctcgtactgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggttgctccggcc
gacatgggtctgatcgtgcgtactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgcattccagcgcgtcgtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgatatcgaagaaaccgcgctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgccgtggaagaaaaagtc
cgtgaatgcctggaagctgaccgtgcccgcgtgcagatcggtcgcatctcgcgtttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcgcaagtg
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcccgcatcgtcattctgccgaacgatcacctcgagacgccgcacttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgccgccgctgccgaagtcgaagaagtccagccagccgctgcgacccgcactctg
gttcgccaggaagctgcggtgaaaactgcgccggcccgtgccaacgcaccggtgccgact
gaagttgcacctgccgcaccagctccagcaccagttgccgcgcctgagccaagcctgttc
aagggtctggtgaagtcgctggtcagcctgttcgccaccaaggaagagccagccgcaccg
gtcgctgttgcgaaaccggctgccaccgagcgtccagcgcgtaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgcaacggtcgccgcgatgaagaacgcaagccacgcgaa
gaacgtgctccacgtgaagagcgcgcaccacgcgagccgcgcgaagagcgccagccacgt
gaaacacgtgagccgcgtgaaacccgcagcgaagcgccggtagcccgcgaagagcgcgca
ccacgtgccccgcgtgaagaacgtgcaccgcgtgcaccgcgtgaagatcgcaagccgcgt
ggcgagcgtgaagagcgtgtgcgtgaactgcgcgagccactggacgccgcgccagtcgca
gccgttgctgccgtgaccgctgaagagcgtccggcccgtcagccacgcgaagaacgcgcc
ccgcgtgcgccgcgtgaagagcgtcaaccgcgtgccgagcaggccgctgctgccgttgct
gaagaagaagtgaacagcaacaacgaagagcaactgccggaagacggtcaggacaacgcc
gaaggcgatcgtccacgtcgtcgctcccgtggccagcgtcgtcgcagcaaccgtcgcgag
cggcaacgtgatgccaacggcaacgtgatcgaaggttcggaagaatccgagtccgctgaa
aacgctggcgagccaagcactgccgatctggccgctggcctggccgtcaccgccgccgta
gccagcagcaccatcagcgctccggcagaagccgaagctcacgagcaggctgaacgcgcc
actgccgccacactggaaaccgctccagtcgaagcgccggttgtcgaagccaccactcca
gtggaagtgactgctgcaccggaaatcgaagtcgccccggtccgcgaagctcagcctcag
gttgaagcgcctgccgaaccggaagctgtcgttgaagcgccagttgctgaatccgaacca
gcaaccgaaaccgtcagcgaaaacgtgaccaaaaccgtgcgtgaagttcgcgaagagcag
actgcgttcaactgggttgccgagccagccgtcactgaaactccagcgccggtcgctgaa
gctgaagtgccgcaggctatggtttccgagccagtagttgcagcggccgaaccggctcca
gagccagtggttgaagcacctgctgtcgaagcaccagttgcaaaagctcaggctgaagaa
gcaccagccgcagtcgaagcgccagccccggtggttgaagctccggctccggtcagcgcc
ctgacgccaaacggccgtgcgccaaacgacccgcgtgaagtgcgtcgtcgcaagcgtgaa
gccgagcgtctgcagaaggaagccgaactggctgccgctgcagcgccagtggctgccgaa
ccagccgctgcggctgaagtgatcgaggcagcccctgccccggtcgcggaagaagcatcg
cttgaagcggtgatcgctgaagcaccacgctccgttcaggacgcagttgaacagcgcgaa
gaagcccaggaaaaagagcacgagcctaaaccactcgtgtaa
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