Pseudomonas koreensis: AYO71_27290
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Entry
AYO71_27290 CDS
T04647
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYO71_27290 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkr03021
]
AYO71_27290 (rpoB)
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_27290 (rpoB)
Enzymes [BR:
pkr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYO71_27290 (rpoB)
Transcription machinery [BR:
pkr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYO71_27290 (rpoB)
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYO71_27290 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF7237
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AMT91085
UniProt:
A0A142NFP7
LinkDB
All DBs
Position
complement(6055955..6060028)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELVPSRLRGEVAVLDIQDEKGKVIVEQGRRITARHINQIEKAGIKTLDVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEVLAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDEIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaaactgctgtactcggctcgcatc
attccttaccgcggttcgtggctggacttcgaattcgacccgaaagactgcgtcttcgtg
cgtatcgaccgtcgtcgcaaactgccggcttcggtactgctgcgcgcactcggttacacc
accgaagaagtgctggacgcgttctacaccaccaacgtattccacctgagcggcgaaacc
ctcagcctggaactggtgccatcgcgcctgcgtggtgaggttgcggttctggacatccag
gacgagaagggcaaggtcatcgttgagcaaggccgccgtattaccgcgcgccacatcaac
cagatcgagaaagccggtatcaagacgctggacgtgccactggactacgtcctcggccgc
accaccgccaaggctatcgtgcacccggctaccggcgaaatcctggccgaatgcaacacc
gagctgaacactgaagtcctggcaaagatcgccaaggcccaggtggttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgttat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgccgcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggccct
ggcggtctgactcgtgagcgcgcaggcttcgaagtccgtgacgtacacccgactcactac
ggtcgtgtctgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcgtacgctcgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaaa
gagggtgtggtcaccgacgagatcgtgttcctgtccgctattgaagaagccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgagcagaaagtcctgatcgacgaactggttgcc
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtgtcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgactctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgatgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtacgtaaaggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagccgcactgaacaagctggacgaagccggtatcgtttatgtaggtgct
gaagtaggcgcaggcgacatcctggtgggtaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaaaggtactgtgatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgttgaaggcgcgactttcgaacgtctg
cgttccgcactggtaggccacaaggccgaaggcggcgccggcctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgcgctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatggtcgaagagcagcgtaaagtcgctgaactgcgcact
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gatcaggaaatcctcgatctggcgaacaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgccg
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
