KEGG   Pseudomonas koreensis: AYO71_27825
Entry
AYO71_27825       CDS       T04647                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pkr  Pseudomonas koreensis
Pathway
pkr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AYO71_27825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pkr03021]
    AYO71_27825
Transcription machinery [BR:pkr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AYO71_27825
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Rv2175c_wHTH MerR HTH_24 Sigma70_ECF HTH_31 HTH_17 EutK_C Sigma70_r3 PhyR_sigma-like HTH_5
Other DBs
NCBI-ProteinID: AMT91178
LinkDB
Position
6175062..6175580
AA seq 172 aa
MSSVPNPHSELVGAMYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLNRDELLTPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPEDEQPSVEEQQMILDDLKAIDRLLGKL
STKARAAFLYNRLDGLSHGEIAARLGVSVPRVRQYLAQGLRQCYIALYGEPT
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtcgtcagtgcccaacccccacagtgagctcgtcggtgcgatgtatcgcgaccatcgc
ggttggctgctggcgtggttgcggcgcaatgtggcgtgtccgcagcgtgccgaggacctg
agccaggacaccttcgtgcgcctgctcaaccgcgacgaactgctgacaccgcgcgaacct
cgagcgtttctggtggcgatcgccaaaggcctgttgtttgactacttccgccgcgccgcg
ctggaacaggcctacctcaccgaactgatgctgatccccgaagacgaacagccgtcggtg
gaagaacagcaaatgatcctcgacgacctaaaggccatcgatcgcctgctcggcaagttg
tcgaccaaggctcgtgcggccttcctgtataaccgcctcgacggcctcagccacggcgaa
atcgccgccagactcggcgtgtcagtgccgcgcgtgcggcagtatctggcgcaaggcctg
cgtcagtgttacatcgccctgtacggtgagccgacatga

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