Priestia koreensis: IE339_01615
Help
Entry
IE339_01615 CDS
T08027
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pks
Priestia koreensis
Brite
KEGG Orthology (KO) [BR:
pks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pks03009
]
IE339_01615 (rlmD)
Enzymes [BR:
pks01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IE339_01615 (rlmD)
Ribosome biogenesis [BR:
pks03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IE339_01615 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
MTS
PrmA
Cons_hypoth95
Methyltransf_11
RrnaAD
PCMT
Methyltransf_32
Methyltransf_12
N6_N4_Mtase
N6_Mtase
UPF0020
TRM
Methyltransf_23
TPMT
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
UNL85267
LinkDB
All DBs
Position
294704..296083
Genome browser
AA seq
459 aa
AA seq
DB search
MAKFIPPIQKNDMIDARFEDLTHDGSGVAKVDGFPIFVPNALPGEEGQVKVTKIKKGYAF
GRLMERTKDSEFRMEPPCPIYTQCGGCQLQHVSYEGQLQFKQKQVQDVMARIGRLPNVPV
HPVLGMEEPWRYRNKAQVPVGERDGRLIAGFYQKRSHEIIDMNECIIQHTENDEVVQLIK
DILNKYDVRAYNEEKHKGTIRHVMVRYGLVTGELMVVLVTRTEELPHKNEIVRDIVEAVP
NVKSIVQNVNSKRTNVILGDKTNVLWGEEYIYDYIGDVKFAISAKSFYQVNPKQTKVLYD
KALEYAELTGEETVIDAYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAKRNAKLNDIHNV
EFAVGESETVIPAWKDQGIQADVIVVDPPRKGCEESLLNTIIEMKPKRVVYVSCGPATLA
RDLQILEQGGYEVKEVQPVDMFPHTTHVECCALIVRIKK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatttattccaccaattcaaaagaatgatatgatagatgctcgttttgaagac
ttaacacacgatggttcaggtgttgcgaaggttgatggctttcccatttttgtaccgaac
gcattgcctggtgaagaagggcaagtgaaggtaacgaagattaagaagggctacgcattc
ggacgtttaatggagcgtacaaaagacagtgagttccgcatggagccgccgtgtccgatt
tatacgcagtgcgggggctgtcagcttcagcatgtgagctatgaggggcagcttcaattt
aaacaaaagcaggtgcaggacgtaatggcacgcatcggacgtttgccgaatgtacccgta
caccctgttcttggtatggaagagccttggcgctaccgtaacaaagcgcaggttcctgta
ggtgagcgtgatggtcgtttgatcgcaggattctaccaaaagcgcagccatgaaattatt
gatatgaacgaatgtattattcagcatacggagaatgatgaagttgtacagcttataaag
gacattctaaataaatatgatgttcgtgcgtacaacgaagaaaagcacaaaggaacgatt
cgccacgtgatggttcgctatggtttagtgacgggagaactaatggtcgtgctcgtgaca
agaacagaagagcttccgcacaagaacgaaatcgttcgtgacattgtagaagcggttccg
aacgtgaagtcgatcgtccaaaacgtgaacagcaagagaacgaacgtgattctcggagac
aagacgaacgttctttggggagaagaatacatctatgactacattggtgatgtgaaattc
gcgatctcagcgaaatccttctaccaagtaaaccctaagcaaacgaaggtgctttatgat
aaagcgctcgaatatgccgagcttacaggtgaagaaacggtcattgacgcttactgcgga
atcggaacaatctctctgttcctcgcaaaaaaagcgaaaaaagtatacggcgttgaaatc
gtcccagaggcaattgaagacgcaaaacgtaacgccaaactaaatgatattcataacgtt
gaatttgccgtaggagaatcagaaacagttattccagcatggaaagaccaaggcatccaa
gcagatgtgatcgtcgtcgatccaccgcgcaaaggctgcgaagagtccctactaaatacg
attattgaaatgaaaccaaagcgcgtcgtctacgtatcatgcggcccagctacactagca
agagacctacaaatcctagaacaaggcggatatgaggtcaaggaagtacaaccagtggat
atgttcccgcatactacgcacgttgagtgctgtgcgttgatagtacgaattaaaaaataa
DBGET
integrated database retrieval system
