Paucibacter sp. KCTC 42545: AT984_02380
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Entry
AT984_02380 CDS
T04227
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pkt
Paucibacter sp. KCTC 42545
Pathway
pkt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT984_02380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkt03019
]
AT984_02380
03009 Ribosome biogenesis [BR:
pkt03009
]
AT984_02380
Enzymes [BR:
pkt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AT984_02380
Messenger RNA biogenesis [BR:
pkt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT984_02380
Ribosome biogenesis [BR:
pkt03009
]
Prokaryotic type
rRNA processing factors
AT984_02380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALT76225
UniProt:
A0A0U3EXZ1
LinkDB
All DBs
Position
complement(522027..525128)
Genome browser
AA seq
1033 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEIARQYFREGVDVRTARVQDAIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWTAIDDAAKGGKGAYLIYQESSLVIRAIRDYFTADVGEILIDTDDLFEQAH
QFMNHVMPDQGHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRQDRARVQFASISKFGLLELSRQRLRPSLSEGNHITCPRCNGTGHIRDTESSALQ
ILRMVQEESMKDNTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEQQDEVGITRRSDSDKGRSKQEPVIKGILPELPAPM
PSPAAPKAAPAAAAAAATPVAAPAAGGGFFGWIKNLFGAPAPAPVETPATPAKPANGERS
KREGGRDGAREGRGGREGREGREGRGRNGERTERGGDRNAKREGGRGDANKPQEARGERP
EGQQRPERPERAERGERGDRGDRNGRRGERNERGNEAKPEGLNANNEQQQQQRPERGNNE
RGEAGGRRPRGERPPRAERSEEQIAAANLASQSGQEPNAFVDSQAPAFGNDGIANADSEA
SNEERQGRGRRRRRNGGAREDGRPVEAGDAGADTQPAAVEGEANAAEGGNEAGDESQQQQ
AANGENRGRGRNRGRERGPRADRGDRAERGERNGNGEAGEQVATATEAAEQAPAALSTQV
EPVQAAPAAANAAVAEPVAAAAEVAVAAAAVAATAPVAAPAAPAAAPVAAATPQVPAFKL
AIDELQAVAAASGLQWVNSDADKIRAVQEAIAAEPKPVHVPREPKPVVSIEEGPLVLVET
RKDLGQVKLPFEV
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgcgacgcagccggaagagcggcgcctcgcaatcgttgat
ggccaaaagctgctggacttcgagaccgaaatcgaaggccgcgaacagcgcaaaggcaat
atctacaaagccgtcgtgacccgcgtcgagccttcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggtttcctgcccttcaaggaaatcgcccgccaatacttccgcgaa
ggcgtggacgtgcgcaccgcccgcgtgcaagacgcgatcaaggaaggccaggaactgctg
gtccaggtcgaaaaagaagagcgtggcaacaagggcgctgccctgaccaccttcgtctcg
ctggccggccgctatctggtgctgatgccgaacaacccccgcggtggtggcgtttcgcgc
cgcatcgagggcgaagaccgtgaagagctgaaggaaaacctcgaccagctcgaatacccc
aagggcatgagcttgatcgctcgcaccgcaggcatcggccgctccgccgccgaactgcag
tgggacctgaactacatgctcaagctctggaccgccatcgacgatgcggccaagggcggc
aagggtgcctacctgatctaccaggaatccagcctggtgatccgcgcgatccgtgactac
ttcaccgccgatgtcggtgaaatcctgatcgacaccgacgacctgttcgaacaggcccac
cagttcatgaaccacgtgatgcccgatcaaggccatcgcgtgaagcgctatcgcgacgac
gcgccgctgttcagccgtttccagatcgaacaccagatcgaaaccgccttcagccgcacg
gtcaacctgccctcgggcggcgccatcgtgatcgaccacaccgaagccctggtttcggtg
gacgtcaactcggcccgcgccacccgtggcggcgacatcgaggaaaccgccacccgcacc
aatctggaagccgccgacgagatcgcgcgccagatgcgtctgcgcgacctgggcggcctg
atcgtggtcgacttcatcgacatggaagagtcgaagaaccgccgcgaagtcgagcaacgc
ctgcgcgacgcgctgcgccaagaccgcgcccgcgtgcagttcgcgtccatcagcaagttc
ggcctgctggagctgagccgtcagcgcctgcgcccttccttgagcgaaggcaatcacatc
acctgcccgcgttgcaacggcaccggccacatccgcgacaccgagtcctcggcgctgcag
atcctgcgcatggttcaggaagagtccatgaaggacaacaccgccgccgttcacgtgcaa
gtgccggtggaagtgacctccttcttgctgaacgaaaagcgcaccgagatcaccaagatc
gagctgaagcagcgcgtcaccgtgctgctggtgcccaataagcatctggaaacgcccaac
tacaagctggagcgcctgcgccacgacgacccccgtctggagaacctgcaagccagctac
accatgatagaagagcagcaagacgaggtgggcatcacccgtcgcagcgattcggacaag
ggccgcagcaagcaagagccggtgatcaagggcatcctgcccgagttgcccgcccccatg
ccctcgccggcagcccccaaggccgcacctgctgccgcagcagcagccgctacgccggtg
gcagcacccgccgctggcggtggcttctttggctggatcaagaacctgttcggtgccccc
gcaccagccccggtggaaacaccggccacgcccgccaagcccgccaatggcgagcgcagc
aagcgcgaaggtggccgtgatggcgcccgtgaaggccgtggtggacgcgaaggtcgtgag
ggtcgcgaaggccgtggccgtaacggcgagcgcactgagcgtggcggcgaccgcaacgcc
aagcgtgaaggcggacgtggcgacgccaacaagccgcaagaagcacgcggtgagcgtccg
gaaggccagcagcgccccgagcgccccgagcgcgctgaacgtggcgagcgcggtgaccgt
ggtgaccgcaatggccgccgtggcgagcgcaacgagcgcggcaatgaagccaagcccgaa
ggcctgaacgccaataacgagcagcagcaacagcagcgccccgagcgcggcaacaacgag
cgtggcgaggccggtggccgccgcccgcgcggtgagcgtccgccgcgtgccgagcgcagc
gaagagcaaatcgccgccgccaacctggccagccagtcgggtcaagagccgaacgccttc
gttgacagccaggcgcctgccttcggcaacgatggcattgccaacgctgacagcgaagcc
agcaacgaagagcgtcaaggccgtggccgccgccgtcgtcgcaacggcggtgcccgtgaa
gatggccgccctgtcgaggcgggtgatgctggtgccgacacgcagcccgcagctgtcgaa
ggcgaggctaacgccgccgaaggcggtaacgaagccggcgacgagtcgcaacagcagcaa
gccgctaacggcgaaaaccgtggtcgtggccgcaaccgtggccgtgaacgtggtccccgc
gctgatcgtggtgaccgcgccgagcgtggtgagcgcaacggcaacggcgaagccggcgag
caagtcgccacggcaaccgaagctgctgagcaagcgcctgccgcactgagcacccaggtc
gagccggtgcaagccgcccccgcagccgctaacgcagcagttgctgagccggtggcagct
gccgctgaagtggcagtggctgcggctgcggttgcagcgaccgccccagtagcagcacct
gcagcacctgcagcagcgcctgtcgcagccgcaaccccgcaagtcccggccttcaagctg
gcgattgacgagctgcaagcggttgccgcggccagcggtctgcaatgggtcaactcggat
gccgacaagatccgcgccgtgcaagaagccatcgccgccgaacccaagccggtgcacgtg
ccccgcgagcccaagcctgtggtgagcatcgaagaaggcccgctggtcttggtcgagacc
cgcaaggatctgggccaggtcaagctgcccttcgaggtttga
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