Planococcus kocurii: AUO94_02125
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Entry
AUO94_02125 CDS
T04200
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pku
Planococcus kocurii
Pathway
pku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUO94_02125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pku03019
]
AUO94_02125
03400 DNA repair and recombination proteins [BR:
pku03400
]
AUO94_02125
Enzymes [BR:
pku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUO94_02125
Messenger RNA biogenesis [BR:
pku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUO94_02125
DNA repair and recombination proteins [BR:
pku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AUO94_02125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
T4SS-DNA_transf
DUF5876
Cellulase-like
Motif
Other DBs
NCBI-ProteinID:
ALS77511
UniProt:
A0ABM5WT47
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All DBs
Position
2157761..2159533
Genome browser
AA seq
590 aa
AA seq
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MLESAKKLLQSHFGYESFRVGQEQAITQVFEGHNSICVMPTGGGKSMCYQIPALVMEGTT
IVVSPLISLMKDQVDALLAAGIPAAYINSSLDFDEVRETLMDVQRGAIKLLYIAPERLDS
EMFLNELQGVHVPLIAVDEAHCISQWGHDFRPSYRLISRMTELFPNNPTVLALTATATPQ
VREDICRILNIEEQHTIMTGFERPNLTFSVIRGQDRERFVKEYVVKNDKEAGIIYAATRK
TVDSVYEMLLKKGIKAAKYHAGMPDHERKSGQERFLNDEVTVMVATNAFGMGIDKSNIRF
VIHYQLPKNMESYYQEAGRAGRDGLPSECIVLYASQDVQTQRFLIDQAQDPSRIPGELVK
LQAMVDYCHTESCLQQFIIHYFGDTAAETCGHCGSCIDDRESLDVTKDVQMVLSCVIRMG
QKFGKVMTAQVLTGSRNKKVLDFKFDKLSTYGILKHQNSKEVSNLIEFMISQELLAVEQG
SFPTIYVPAGGRDVLLGKRQVLRKGAVVTKQIAANDPLFEELRVVRKSLADKDGVPPFVI
FSDKTLQDMVARRPQNDAEFLEVNGVGANKLEKYGDAFLQAIHSFDAPNK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
ttgttggaaagcgcaaaaaaattactgcagtcccattttggttatgagtcctttcgagta
ggtcaagagcaagctattacgcaagtatttgaaggacataattcgatttgcgtcatgccg
acaggcggagggaaatctatgtgctaccaaattccagcgcttgttatggaaggcaccacc
attgtcgtgtcaccattgatttcactgatgaaagaccaagtagatgcacttttggccgct
ggtattccggcggcttatataaatagttctctcgattttgatgaagtgagagaaacgtta
atggacgtacagcgtggagcgatcaaattactgtatattgcacctgagcgattggattca
gagatgttccttaatgaattgcaaggcgttcatgtgccgttgattgctgtcgatgaagct
cattgtatttcacaatgggggcatgacttccgtccgagttaccggttgattagccggatg
acagaattgtttccgaacaatccgacagtactggctctgactgccactgcaacacctcaa
gtgcgggaagacatttgccgaattttgaacattgaagagcagcatacaatcatgacggga
tttgaacgacctaatttaacattttccgtcatacgagggcaagatcgtgagcgattcgtg
aaagaatatgtggtaaaaaacgataaggaagccggaatcatttatgcggctactcgtaaa
acagtagactcggtatacgaaatgctacttaaaaaaggcattaaagcggccaagtatcat
gccggtatgcctgatcatgaaagaaagagtggtcaagagcgttttctgaatgatgaagtg
acggtcatggttgccaccaatgcatttggaatggggatagacaaatccaatattcggttt
gttattcattaccagcttccgaaaaacatggaaagttattatcaggaagcaggacgtgct
gggcgagacggcctgccaagtgagtgtattgtgttatatgcttcgcaggacgttcaaacg
cagcggtttttaattgatcaagcacaagatcctagccgcattccaggagaattagtgaaa
ttacaggcaatggtcgattactgtcatacagaaagttgcctccaacaatttatcattcac
tattttggagataccgcagcagaaacgtgtgggcattgtggaagttgtatagatgatcgt
gaaagcttagatgttactaaagacgttcagatggttttgtcgtgtgtcattcggatgggg
cagaagttcggtaaagtgatgacagctcaagtgttgaccgggtcacgcaataaaaaagtg
ttagatttcaagttcgataagctgtcaacatacggaattttaaaacaccaaaactccaaa
gaagtttcgaatttaatcgaattcatgatttcacaagaattattagcggtcgaacaaggc
tcattcccaactatctacgttccagctgggggcagagatgtcttgctcggtaaacgtcag
gtccttagaaaaggagcagtcgtgacaaagcaaatcgctgctaacgatcctttattcgaa
gaattacgtgtagtacggaaaagtttggctgataaagatggtgttccacctttcgttatt
ttttctgataagactttgcaagatatggtagctagaagaccgcagaatgatgctgaattt
ttggaagtcaatggagtaggtgccaacaaacttgaaaagtatggcgatgcctttttacaa
gcaatccattcgtttgatgctccaaataaatga
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