Planococcus kocurii: AUO94_02165
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Entry
AUO94_02165 CDS
T04200
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pku
Planococcus kocurii
Pathway
pku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUO94_02165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pku03019
]
AUO94_02165
03009 Ribosome biogenesis [BR:
pku03009
]
AUO94_02165
Enzymes [BR:
pku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AUO94_02165
Messenger RNA biogenesis [BR:
pku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUO94_02165
Ribosome biogenesis [BR:
pku03009
]
Prokaryotic type
rRNA helicases
AUO94_02165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Adenosine_kin
AAA_19
UvrD-helicase
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ALS77518
UniProt:
A0ABM5WTD6
LinkDB
All DBs
Position
2172073..2173518
Genome browser
AA seq
481 aa
AA seq
DB search
MNIKKFSEYGVSEPIVKALEGLGYTEPTEVQSKVIPVALSKTDLTVKSQTGSGKTAAFGI
PICELVDWEENKPQALILTPTRELADQVKEDLTNIGRFKRIKAAAVYGKQPFAYQQAELK
QKCHVVVGTPGRVFDHIERGTLNLERIEYLVLDEADEMLNMGFVEQVEAIINKLPKQRTT
MLFSATLPENVEKLQKKYMTDPKHIEIAATESLTAQIDHSLFVVAEQKKFSLLRDVTIVE
NPDSCIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNDFKRGEFRYLVATD
VAARGIDIDSITHVINYDLPMEKESYVHRSGRTGRAGKTGRAISFVTPNEDKFLAEIEDY
IGFEIPRRTAPSVNDVDRAMPAFTEKLESRPKLKRNKNEQVNKDILKLYFNGGKKKKLRA
FDFVGTLTSIPGVTAEDIGIIKIQDTVTYIDILNGKGPMVLKAMKDKTIKGKTLKVHKAN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacattaaaaagtttagtgagtacggagtaagtgaaccaattgtaaaggctcttgaa
ggactgggctatacagaaccgacagaagtccaaagtaaagtgattcctgtagcattgtca
aagactgacctaacggtaaagtcgcaaacaggaagcggtaaaacagcagcgttcggaatt
ccaatctgcgaactagttgactgggaagaaaacaaaccgcaagcattaattttgacacca
acgcgagaattagcagatcaggtaaaagaagatttaacaaatatcggccgctttaaacgc
attaaagcggcggcagtttatggtaaacagccttttgcttatcagcaggctgaactcaag
caaaaatgtcacgtcgtcgttggaacaccgggccgtgtttttgatcatattgaacgtgga
acattgaacttagagcgtatagagtacttggttcttgatgaagcggatgagatgctgaat
atgggctttgtcgaacaagtagaggctattatcaacaaattgccgaagcagcgcacaacc
atgctgttttcagcgactttgcctgaaaatgtagaaaaactgcagaaaaaatacatgact
gatcccaagcatatagaaattgctgccactgaaagcttaacagctcaaatcgatcattcg
ttatttgttgttgctgaacagaagaagttttcgctgttacgtgacgtaacaattgttgaa
aatccggatagctgcatcattttctgtcgcacaaaagacaatgtcgattttgtcatggaa
caattggaaaagcattattatacttgtgataaattgcacggtggtatgcttcaagaagat
cgtacagcagtcatgaacgattttaagcgtggagaattccgttacttagtagcgacagat
gttgcagcacgcggaattgatattgacagtattacgcacgtcattaattatgacttgcca
atggagaaagaaagttatgtgcaccgttcaggacgtaccggacgtgcgggtaaaacagga
agagcgatttcgtttgtaacaccaaacgaagataaatttcttgcggaaatcgaagattat
atcggatttgaaattccgcgtagaacagctccttcagttaatgatgtggatcgtgcaatg
cctgcgtttactgagaagcttgaaagccgtccaaaactcaaaagaaataaaaatgagcaa
gtgaataaagatattcttaagttgtactttaatgggggcaagaaaaagaaacttcgtgct
tttgatttcgttggaactttgacgagcattccgggagtgacagctgaagacattggaatt
attaagattcaagatacagtgacgtatattgatattttgaacggcaaaggccctatggtg
ctaaaagcgatgaaagataaaaccataaaaggaaagacactcaaagtgcacaaagcaaat
aaataa
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