Planococcus kocurii: AUO94_03555
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Entry
AUO94_03555 CDS
T04200
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pku
Planococcus kocurii
Pathway
pku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUO94_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pku03021
]
AUO94_03555
03019 Messenger RNA biogenesis [BR:
pku03019
]
AUO94_03555
Transcription machinery [BR:
pku03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AUO94_03555
Messenger RNA biogenesis [BR:
pku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AUO94_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
ATPase_2
AAA
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALS77778
UniProt:
A0ABM5WU23
LinkDB
All DBs
Position
2452274..2453557
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AA seq
427 aa
AA seq
DB search
MATITISALENMTLKELYNLAKEYKLTNYSKLSKKELIFAILKTRAEQEGFFFMEGVLEI
IQSEGFGFLRPINYSPSSQDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRHIRLETTPAHLSTRIMDLVSPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVETGSRMDEVIYEEFKGTGNMELHLDRSLAERRVFPALDIR
RSGTRKEELLIEPKQLEKLWAIRKTFSDTHDFGERFLKKLGQTNTNEEFFEQLATEMKTH
RNNKKMI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgataacaatctccgcactggagaatatgacgttaaaagagctttacaattta
gcaaaagaatacaagctgactaactacagtaagctatctaaaaaggaactaatttttgcg
attttgaaaacgcgtgcagaacaagaaggttttttctttatggaaggtgtattggaaatt
atccaatctgaaggttttggtttcttacgaccaatcaattattcgcctagctcacaggat
atttatatttccgcttctcaaatccgtcgttttgatttgagaaatggcgataaagtttca
gggaaagtacgtccgccgaaagaaaatgaacgctatttcgggttgctgcaagtagaagca
gtcaacggtgaagatccagaagtggcgaaagaacgtgttcactttccagggcttacacca
ctttacccagatcgtcacattcgtttagaaacgacgccggctcatttatctacgcgcatt
atggatttagtatcgcctgtcggatttggtcagcgcggtttaatcgtagcgccgcctaaa
gcgggtaagacaatgctactaaaagaaatcgctaattccattacaacgaatcacccagaa
gcagaactaattgtcttgctaatagatgaacgtccagaggaagtaacggacatcgagcga
tcagtaaatgcagatgtcgtgtcgtcgacgtttgatgaagtccctgaaaaccacgtgaaa
gtcgctgaacttgttcttgaacgtgctatgcgcctcgttgaacataaacgagacgtagtt
attttaatggactcaattacgcgcctagctcgagcatataatttggtgattcctccgagt
ggacgtacactatcaggaggaatcgatccagcagctttccaccgaccaaaacgctttttc
ggagcagcacgtaatatcgaagaaggcggcagtttaactattttagcgacagctttagta
gaaactggatcgcgtatggatgaagttatttatgaggaatttaaaggaacaggtaacatg
gaattgcatcttgaccgcagtttggccgagcgccgagtcttcccagcacttgatattcgt
cgttctggcacacgtaaagaggaattgttaattgaaccgaaacaacttgaaaagctttgg
gctattcgaaaaacgttctcggatacacatgattttggagaacgtttcctgaaaaaacta
ggtcaaacaaataccaatgaagaattttttgagcaattagcaactgagatgaaaacgcat
cggaacaataagaagatgatttaa
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