Planococcus kocurii: AUO94_05025
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Entry
AUO94_05025 CDS
T04200
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pku
Planococcus kocurii
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pku03400
]
AUO94_05025
Enzymes [BR:
pku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUO94_05025
DNA repair and recombination proteins [BR:
pku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
AUO94_05025
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ALS78048
UniProt:
A0ABM5WUR1
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All DBs
Position
2784242..2787718
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AA seq
1158 aa
AA seq
DB search
MSLRIVYGRAGAGKTRFVQEEIVDELKRQADGEPIFLIVPDQMSFSTEYQLAADYGMNGM
IRAQAVTFKRLAWRVLQEVGGISRKEVDTFGYRMLIRSLLEDHRDDFQLFRRAAGKRGFT
DQIEQLVKEFARYCVDCLELGSIRSSLTEAGAPRTLLDKAQDLELILTEIENRLGKVFVD
SEGHLALLSEKIPYSDLVKSATIYIDGFVTFTAREYEILFELMKHAKSVTIALPMDEQTD
PNDEQALFYQSANTARRLTEQAAKEGIEIDHSVHLDLSRRFTNSELQHIEQHFDVFPTPT
IQGSGHVTLVEASNRRAEMHAVARAIRDQVRSGFRYNEIAILYRQPEIYDELINTIFPQY
EIPYFISQKKSMLHHPLIEFSRSILEAVVNNYSYESIFRAVKTDLFFPQGPVSKWRERSD
VLENFVIANGIYGERWFEEKRWFYKKYRGLEFHTSIQTDEELAAQLELHAVRDLIREPMA
QLKEQLKLSKTGRDIAESLFLFIEKMNVYAKIQDLREREEQEHRLLAATEHEQAWNQWIG
VLDQFVLMFGDKEIDLPTAVKILDEGFETLEFSRIPPSLDQVMVSKIDLARLMDIKSVFV
VGANDGVLPKRIEQDGILTDTDREWFAQIGFELAPTSKMRLMDETYMVYRAFTSASDLLT
VSFPIADEEGKALLPSLYIQKLKDMLAIETIPAVIDPEELLNASPLAYISHPRASLAYLT
SQIRGGDLSAEWHAVLHYYQEDPFWSSVIHRILAPLKPNTADSLRKNIADPLYGTPISSS
VSRVETYYGCPFAHYVAYGLRLEERSQYKLAAPAMGDLFHAAIKWISDEVLRLGVSWSSL
TKTQCQNLAKQAIEQLSPYFVNHILISSHRYRYIQHKLEGIIRQTAFMLSKHAKVSGFVP
VALEVGFGPKETIPPLEISLKDGRKMNVRGRIDRIDSTEIHGKPYLRVVDYKSSKQGLDL
SNVYHGLSLQTFTYLDVALTHADRWLGKEAEPAGVLYFHMHNPMLKLTKLMTAEELEEEL
AKSFKMNGLVVEDPEVIQAMDDGIDGYSNVIPVRLNKSGAVSASQSKTVMKEDMQAIRRF
VRGKHQNAGNGILEGNTSITPYKVKEDTPCQFCSYRSVCQFDPADPQQNYRKLSALSPQQ
AVELIRKETAADDTEKTD
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcgcattgtatacggcagagcgggagcgggaaaaactcgttttgttcaagaa
gaaatagtagatgaattgaaacgacaagcagacggagaaccgattttcctcatcgttccg
gatcagatgtcgttttccaccgaatatcagcttgcggcagattacggcatgaacgggatg
attcgagcacaggccgttacttttaaacgactggcttggcgtgtgctacaagaagttgga
ggcataagcaggaaagaagtggatactttcggataccgcatgctcatccgcagcttattg
gaagatcaccgagatgattttcaattatttcgtcgggcagccggcaaaagaggttttacc
gaccaaattgaacaactagtgaaagagttcgctcgctactgtgtggattgtctagaattg
ggatcaatccgttcttcattaactgaagctggggcgccgagaacgctgctcgataaagca
caagacctcgaactaatccttaccgagattgaaaatcgtttaggaaaagtttttgttgat
tctgaaggtcacttggctttactgagtgaaaaaattccatattcggatctagtgaaatca
gcgacgatctacattgatggatttgtaacatttacagcgagagaatacgaaattcttttt
gaattaatgaaacatgctaaatcggtgacgattgccttaccgatggatgaacaaacagat
ccaaacgacgaacaggctttattttatcagtctgctaatacggccagacgattaactgaa
caagctgcgaaagaaggcatcgagattgaccattcggtgcatttggatttgtcacgccga
tttactaattcagaacttcaacatattgaacagcattttgacgtgtttccaactccaaca
attcaaggatcaggtcatgttacgctagtcgaggcctcaaacagaagagctgagatgcat
gcggtggcacgcgcgataagagaccaagtaagaagtgggtttcgttataatgaaattgcc
atcctctacagacagcctgaaatttatgatgaactgattaatactatttttccgcaatac
gaaattccttattttattagtcaaaaaaaatcgatgctccatcatccattgatcgaattc
agccgctctattcttgaagcagttgtcaataattattcctatgaatcaatttttcgggca
gttaagacggatttgttttttcctcaaggacctgtctccaaatggagagaacgcagtgat
gtgctggagaactttgtcatagcaaatgggatatacggagagcgttggtttgaggaaaag
cgctggttttacaaaaaataccgtggactggaatttcatacgtcaattcaaacagatgaa
gaattggcagctcaactagagcttcacgcagttcgtgatttaatcagagaaccgatggca
cagttaaaagaacaattaaaacttagtaaaacaggaagagatatagcggaatcactgttt
cttttcatagaaaaaatgaacgtttacgccaaaattcaagatttgagagaacgcgaagaa
caggaacatcgtctattagcggctaccgaacacgaacaggcctggaaccagtggatcggt
gtactggatcagtttgtgttgatgtttggagataaagaaatcgatttaccaacagcggtg
aaaatcttagacgagggttttgagacgctagaattttcacgaattccgccttcattagat
caagtcatggtatccaaaattgatttagcgcgtttgatggatatcaaatcggtattcgtc
gtcggagctaatgatggagtattgccgaagcgaatcgagcaagatgggattttgacggat
acagaccgtgaatggtttgcgcagatcgggtttgaactagcgccaacttcgaaaatgcgt
ttaatggatgagacttatatggtttaccgtgcatttacctctgcatcggatttgttgacg
gtgtcgtttccgattgcagatgaggaaggcaaagcactgttgccttctctttatattcaa
aagctgaaagatatgttagcgattgaaacgattcctgctgttatcgatccggaagagcta
ctaaacgcttctccattggcatatatttcgcatccacgagcgagtttagcttatttaacg
tcgcaaattcgcggtggggatttgtcagcagaatggcatgccgttttacattactatcaa
gaagatccattttggtcttctgtcattcaccgcattttagcgccacttaagcccaataca
gcggattcactgcgcaaaaacattgcagatcctttatatggtacgccaatttcctctagc
gtttcacgagttgaaacgtattatggctgtccgtttgcgcattatgtggcatatggttta
cgccttgaagaaagaagtcaatataaattagcagctcctgctatgggtgatctttttcat
gcagcgattaaatggatatcagatgaagtgttgcgacttggcgtatcctggtcatcactg
acaaaaacacagtgtcaaaacttagcgaaacaggcaattgaacaattatcgccttatttc
gtcaatcatatcttaattagttcacaccgctatcgttatattcaacataaactagaaggg
attattcgtcagacagccttcatgttaagcaagcacgccaaagtttctggctttgtccca
gttgcacttgaggtagggtttggaccgaaagaaaccattccaccacttgaaatctcttta
aaagatggtcgcaaaatgaatgtccgcggacgcattgatcgaattgattcgactgaaatc
cacggcaaaccgtatttacgtgtcgtcgattacaaatcatctaaacaaggtcttgacctt
agtaatgtctatcacggtctgtcgctacagacttttacgtatttagatgtagcattgaca
catgctgatcgctggcttggaaaagaagccgaacctgctggcgtactgtacttccatatg
cacaatcctatgctaaagctcacaaagttgatgacggctgaagagttagaagaagaactg
gcaaaatcctttaaaatgaatggcttggtcgtggaagatccagaagtaattcaagcgatg
gatgacggcatagatggctattccaacgttatacctgtgagactcaacaaaagtggtgca
gtatcagctagccaatcaaaaacagtcatgaaagaagacatgcaagccattcggcggttt
gtccgtggcaagcaccaaaatgccgggaatggcatactagaaggcaatacgagcattact
ccttataaagtaaaagaagatacaccttgtcaattttgttcttatcgctcggtttgtcaa
tttgatccggcagatccacagcaaaactaccgaaaactttcagctttatcaccccaacag
gcagttgaattgattagaaaggagaccgctgcagatgataccgaaaaaaccgattga
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