Planococcus kocurii: AUO94_06340
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Entry
AUO94_06340 CDS
T04200
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pku
Planococcus kocurii
Pathway
pku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUO94_06340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pku03019
]
AUO94_06340
Messenger RNA biogenesis [BR:
pku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AUO94_06340
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Sec8_C
Gemini_AL1_M
Motif
Other DBs
NCBI-ProteinID:
ALS78298
UniProt:
A0ABM5WVB2
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All DBs
Position
3060825..3062492
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AA seq
555 aa
AA seq
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MSKIKNEVIRVIPLGGVGEIGKAMYVIEIDEDLFVVDSGLMFPEDEMLGVDIVIPDMTFL
EENKDRVKGVFLTHGHEDAIGSIAYLMKKIQAPVYGSKLTIALAKEHIKEQGSLKHVKFF
EVTNKSRMNFDKTHVTFFHTTHSIPDALGIVFHTSEGAIVHTGEFKFDQSAKGSYKPDIA
KMAKLGEDGVLMLLSDSTEAERPGYTTSEIVVADHILSAFLAAEGRVLVSLYSSNFIRIQ
QVFDSAATTGKKVAVAGRSLENSYEVGLRLGYLTVHEDVVISLKDLENYRDDEVVIIVTG
NQGEPLEALDKMVRKQHKDVKIKETDTVLITFTPSPGMEVPMFQTMNKLAKAGANVLTAS
KKVHVSGHGSQEDLKMMLNMMKPKYFIPIQGEYKMLIAHSKLAQQVGLHKSEIFIADKGD
IVEYKGGKVRMSGRVTAGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIVVVTLNRKEKKI
ASGPEMISRGFVYVRESEELMEESTRLVRKVVEKYVTRDAFEWNNIKQEIRDTLNSYLFQ
QTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaattaaaaatgaagtaataagagttatccctttaggcggcgtcggcgaaatc
ggcaaagcaatgtatgtaatagaaattgatgaagatttatttgttgtagatagcggattg
atgttcccagaagatgagatgctgggtgttgacatcgtcattccggatatgacattccta
gaagagaacaaagaccgtgtaaagggagtttttctgactcacggtcatgaagatgcgatt
ggatcaatcgcttatctaatgaaaaagattcaagcaccagtttatggatcgaaattaaca
attgcgttagctaaagaacatattaaagaacaaggctctttaaaacatgtgaagtttttt
gaagtgaccaataaaagccggatgaactttgataaaacacatgtaacgtttttccatacg
acacatagtattcctgatgcacttggaatcgtcttccacacatcagaaggtgccattgtg
catacgggtgaatttaaatttgatcagtcggctaaaggaagttacaagccagatatcgca
aaaatggcgaaacttggagaagacggcgttttaatgctgttgtctgattcaactgaagct
gagcgtccagggtacacaacttctgaaatcgtggttgctgatcatattttatcagcattc
ctagctgcagaagggcgtgtactggtatctctgtattcatcaaactttattcgtattcag
caagtatttgatagcgcagcaactacaggtaaaaaagtagcggtagctggtagaagtctt
gaaaatagttatgaagttggattgcgtcttggctatttgaccgttcatgaagatgttgta
atctccttaaaagatttggaaaactaccgtgatgacgaagttgtgattatcgttacaggt
aaccaaggcgaaccactggaagccttggacaaaatggttcgtaaacaacacaaagacgtt
aaaattaaagaaaccgacacagtattaattacattcacaccatcacccggtatggaagtt
cctatgttccaaacaatgaacaaactggcaaaagccggtgcaaacgtattaactgcaagt
aagaaagtccacgtctcaggacatggtagtcaagaagacttgaaaatgatgctcaatatg
atgaagcctaagtatttcattccgattcaaggtgaatacaaaatgctaatcgcgcactct
aaattagctcaacaagttgggttgcataagtctgagatctttattgctgacaaaggggac
atcgtcgaatacaaaggcggcaaagttcggatgagtggacgtgttactgctggaaacgtc
ttaatcgatggaatcggcattggcgacgtaggaaacatcgttctacgtgatcgtaaatta
ttgtcgcaagatggtatttttatcgtcgtggttacgttaaaccgcaaagaaaagaaaatt
gcatcgggtccggaaatgatttcacgcggctttgtctatgttcgtgaatcagaggaattg
atggaagaatcgacaagacttgttcgaaaagtcgttgaaaaatacgttacgagagacgca
ttcgagtggaacaatattaaacaagaaattcgtgatacattgaattcttacttgttccaa
caaacaaaacgtcgtccaatgattatcccaattattatggaatactaa
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