Planococcus kocurii: AUO94_09940
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Entry
AUO94_09940 CDS
T04200
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pku
Planococcus kocurii
Pathway
pku03410
Base excision repair
pku03430
Mismatch repair
pku03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AUO94_09940
03430 Mismatch repair
AUO94_09940
03440 Homologous recombination
AUO94_09940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pku03400
]
AUO94_09940
DNA repair and recombination proteins [BR:
pku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AUO94_09940
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AUO94_09940
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUO94_09940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ALS78957
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All DBs
Position
complement(317738..319741)
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AA seq
667 aa
AA seq
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MIPNRFKHGYGPNSELFQQAFDQGTKLIVTVDNGISGIEQVDFANALGMDVIISDHHDIG
DQLPNALAVVHPRHPQGHYPFGELAGVGVAFKIAHALYEEIPDHLIELTAIGTVADLVPL
HGENRIFVKEGLAALIDSPSPAIAALCEVSGVKQQDITEETIGFMFGPRINAIGRLQDAD
PAVRMFLTEDPAEARSLASGLDVLNKERQAIVKKISEEAMQQVEQRYPDGVPHVLVVAQE
GWNPGVVGIVASKLTEKFYRPSIVLSVDPETNKAKGSARSIEGFHLYNELAKNRDILPHF
GGHPMAAGMTLAASDVDDLRERLNKQAEISLTEEELLPVVNIDIPLRLDEIDITAIESMR
LLAPFGMGFAKPKFYLEGVHVASIRKIGAAQNHLKMELTQQAASIDAVGFGLGSVGDELT
PDVKIDVIGDLQVNEWNGRKKPQLMVEDVRTDQWQLFDIRGIRQVSRWSKLIPKENQVFL
AFKEETPALFQSLLAQPICTVAQVKAMSGSKDHLVLLDLPESEEQLVSVLANMKPKRVYA
HFHAKDSQYFEQIPTREQFKWLFSFIKKRGTFDFTKHCDELAKHKGWTRESLFFMLQVFF
ELGFVTLNNGITEIAQSPSKQDLSEAPIYKRREQQIALEQKLLYASYKDLKEWFDATVSA
KEEQIWI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgataccgaaccgctttaagcatgggtacggaccgaatagtgaactgtttcaacaagca
tttgatcagggtacgaaactaattgtcacggtagataatggcatttcaggaatcgaacaa
gttgattttgctaacgctttagggatggacgttattattagtgatcatcacgatatcggt
gaccaattaccaaatgcactagcggttgttcacccgcgtcatccacaaggccactatccg
tttggtgaactggctggagttggtgtagcgtttaaaatagcacacgcactgtacgaggaa
attccagaccacttgattgaactaaccgcgatcggtacggtggccgatcttgttccgctt
cacggggaaaaccgaatttttgttaaagaaggactagctgcacttatcgattcaccgagt
cctgcgattgctgcattgtgcgaagtatcaggcgttaaacagcaagacattacagaagaa
acaatcggctttatgtttggaccgcgcattaatgccattggacgtttgcaagatgctgat
ccagctgttcgcatgttcttaacagaagacccagcagaagcacgttcactggcttcaggg
ttagacgtgttaaacaaagagcggcaagcgattgtgaagaaaatttcagaagaagcgatg
cagcaagttgaacagcgttatccggacggtgtgccgcatgtgttagtggtcgctcaagaa
ggctggaacccgggtgttgttggaatcgttgcctcgaaactaacagaaaaattttatcgc
ccgtctattgttttgtcggtagatcctgaaaccaacaaagcaaaaggttctgctcgcagt
attgaaggctttcatttgtataacgaacttgctaaaaaccgcgacattttgcctcatttc
ggaggccatccaatggcggcgggtatgacgcttgcggcaagtgacgtcgatgatttgcgt
gagcgcttaaacaaacaagcggaaattagcttaactgaagaagagttattgcctgttgtc
aacatcgatattccgctccgtcttgacgaaatcgacataacggcaatcgagtccatgcgc
ttacttgctccttttggaatgggctttgctaagccgaaattttatcttgaaggggtccat
gtggcatccattcgcaaaattggagctgcccaaaatcacttgaagatggaactgacacag
caagcagcttctatagacgctgttggttttggtctcggttcggttggtgatgaattaaca
ccggatgtcaaaatagatgttatcggtgatttacaggtcaatgaatggaatggtcggaaa
aaaccgcaattgatggtggaagatgttcgtacagatcaatggcaattatttgatattcgc
ggcattcgccaagtatcgcgttggtcaaagttgatcccgaaagaaaatcaagtattccta
gcgtttaaagaagaaacacccgcattattccagtccctattggctcaacccatttgcact
gttgctcaagtaaaagccatgtcaggaagtaaagaccacttggtgttattggatttaccg
gaatcagaagagcaattggtatctgttttagcaaatatgaagccaaagcgggtgtatgct
catttccatgcgaaagattctcagtattttgaacagattcccacacgtgaacaatttaaa
tggctgttttcgtttattaaaaaacgcgggacttttgactttactaaacattgtgacgaa
ctggcgaaacacaaaggttggacgcgggagtcattatttttcatgctgcaggtgtttttt
gaactcggttttgttacacttaacaatggcattaccgagattgcgcaatcgccaagcaaa
caggatttgtcagaagcgccgatttacaaacgtcgcgagcagcagattgctctggagcag
aagcttttgtatgcgtcttataaagatttaaaagagtggttcgatgcgacagtgtctgcc
aaggaggaacaaatatggatttaa
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