Planococcus kocurii: AUO94_14445
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Entry
AUO94_14445 CDS
T04200
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pku
Planococcus kocurii
Pathway
pku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUO94_14445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pku03019
]
AUO94_14445
03009 Ribosome biogenesis [BR:
pku03009
]
AUO94_14445
Enzymes [BR:
pku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AUO94_14445
Messenger RNA biogenesis [BR:
pku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUO94_14445
Ribosome biogenesis [BR:
pku03009
]
Prokaryotic type
rRNA helicases
AUO94_14445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
ALS79739
LinkDB
All DBs
Position
complement(1244621..1246192)
Genome browser
AA seq
523 aa
AA seq
DB search
MYTICKSDEDKRRLKNLVKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIG
QAQTGTGKTTAFGIPLIEKIDTKDGNVQGLIIAPTRELAIQVSEELYRLGQDKNVRILSV
YGGQEISRQIRALKNRPQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIED
IQTIMASVPDTRQTLLFSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVE
REKFDFLSRLLNVQQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLK
QFKAGKIDILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFV
TPREMGYLGIVERTTKKKMEALIPPTANEAVLGQKRVAMEQLFEMTEKNNLGDYREFAAQ
MLEKHDAVDLIAAALKTMTKEPEDVPVSISEERPLPSRGGGGYKGKGGGGRSSGGGGYKG
NRSSGSARPSSSRGASSGASRRREGGSATGGGRPGRTTRRSES
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccatttgtaaatcagatgaagacaaaaggagattgaaaaatttggtaaaattt
tcagagttaaatattagcgaaacaactttaaagtccgtaaaacgtatggggtttgaagaa
gcaacaccaattcaagagggaacgatccgtcttggaatggaaggtaaagacattattgga
caagcgcaaactggtactggtaaaactacggctttcggaattcctttgattgaaaaaatc
gacactaaagacggtaatgttcaaggattaatcatcgcaccaacacgcgaattggcaatc
caggtttctgaagaactttacagattgggacaagataaaaacgtacgtattctttcagta
tacggcggccaagaaattagccgacaaatccgtgcacttaaaaaccgtccgcaaattatc
gttggtactccaggacgtctattagaccatatcaaccgtcgtacgcttaaattggacaat
gtcaacacattaatccttgatgaagcagacgaaatgttgaacatgggctttatcgaagac
attcaaacaattatggcaagtgttcctgatactcgtcagacattgttgttctcagcaact
atgccggatgcaatccgtcgcattgcagagaaattcatgaaaactccagaaatcgttaaa
atcaaatcaaaagaaatgactgttgaaaacattgagcagttctacgtgaagtctgtagag
cgcgagaaatttgatttcctttcacgtcttttgaatgttcaacaaccggaacttgcgatc
gttttcggacgcacaaaacgccgtgttgatgaattagctaaagctttgaatatccgcggc
taccttgctgaaggaattcatggtgacttgagccaagcaaaacgtatgtctgttttaaag
cagtttaaagccggcaaaatcgatatcttggtagcaacagatgtagcagctcgcggactt
gatatctcaggcgtgtcacacgtatacaactttgatattccacaagatcctgaaagctat
gttcaccgtatcggccgtacgggtcgtgcaggtaaaaaaggagtcgcagtaacgtttgta
acaccacgtgaaatgggctacttgggcattgttgaacgcactacgaagaaaaagatggaa
gctttaattcctccaactgcgaacgaggctgtacttggtcaaaaacgagttgcgatggaa
caattgtttgaaatgacagagaaaaacaatcttggcgattaccgtgaattcgcggcgcaa
atgcttgaaaagcatgatgcggttgacttgattgcagcagctcttaaaacaatgactaaa
gaaccggaagatgttccagtatcaatttccgaagaacgtcctttgccatcacgcggaggc
ggcggatataaaggtaaaggcggcggcggacgcagttctggaggcggcggttacaaaggt
aatcgttcatcaggttcagctcgtccatcatcaagccgtggagcaagctcaggcgcaagc
cgtcgtcgtgaaggcggaagtgcaactggcggcggacgtccaggacgtacgactcgtcgt
agcgaatcttaa
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