Pseudomonas khavaziana: QYQ93_05955
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Entry
QYQ93_05955 CDS
T10400
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pkv Pseudomonas khavaziana
Pathway
pkv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYQ93_05955 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkv03019
]
QYQ93_05955 (rhlB)
Enzymes [BR:
pkv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QYQ93_05955 (rhlB)
Messenger RNA biogenesis [BR:
pkv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QYQ93_05955 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WWA77779
UniProt:
A0ABZ2DHQ7
LinkDB
All DBs
Position
complement(1358851..1360317)
Genome browser
AA seq
488 aa
AA seq
DB search
MTVLKALKKMFGKSAAEPLAPVPSAPAPKPGNRNDGQQPGRTAPAAAPKQPSVTPPEQAQ
PAEVAAAPAAKPRRERAPKPPVTPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFP
YCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALII
APTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFN
QRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQTLLFSATFTEDVMNLA
KQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEV
RRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI
NFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGRKISCETPPTHLL
RAVERKRS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggcaaaagcgcggctgagccgctcgcg
cctgttcccagtgctcctgcccccaagcccggcaaccgcaatgacggtcaacagcctggc
cggaccgcgcccgccgccgcaccgaaacaaccctcggtgacgccgcctgaacaggcccag
cctgccgaggtcgctgcggcgcccgcggccaaaccacgtcgcgaacgcgcgcccaagccg
ccggtgaccccgtggaaactcgaagacttcgtcgtcgagccccaggaaggcaagacccgc
ttccacgacttcaagctggccccggaactgatgcacgccatccaggacctgggcttcccg
tactgcacaccgatccaggcgcaggtgctgggcttcaccctggcaggcaaagacgccatc
ggccgcgcccagaccggtaccggcaagaccgccgcattcctgatctcgatcatcacccag
ctgctgcagacgccaccgccgaaagagcgctacatgggtgagccgcgcgccctgatcatc
gcaccgacccgggagctggtggtgcagatcgccaaggacgccgccgacctgaccaagtac
accggcctcaacgtaatgaccttcgtcggcggcatggacttcgacaaacagctcaagcac
ctcgaagcccgccactgcgacattctggtcgccaccccgggccgcctgctggacttcaac
cagcgcggcgacgtgcatctggacatggtcgaagtgatggtgctggacgaagccgaccgc
atgctcgacatgggctttatcccgcaagtacggcagatcatccgccagaccccgcccaaa
gccgagcgccagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgcc
aaacagtggaccaccgacccgtccatcgtcgagatcgaggcactgaacgtcgccagcgaa
aacgtcgagcaacacatctacgccgtagccggtgccgataagtacaagctgctctacaac
ctggtcaacgacaacggctgggagcgcgtgatggtcttcgccaaccgcaaggacgaagtg
cgccgcatcgaagaacgcctggtgcgcgacggcgtcaacgccgcgcaactgtccggcgat
gtgccgcagcacaagcgcatcaagacattggaaggctttcgtgaaggcaagatccgcgtg
ctggtggccaccgacgtggcggggcgcggcattcatatcgatggcatcagccacgtgatc
aacttcaccctgccggaagtgccggacgactacgtgcaccgcatcggccgtaccgggcgt
gccggggctgcgggtgtgtcgatcagctttgccggggaagatgattcgtatcagttgccg
tcgatcgaagccctgctggggcgcaagatcagttgcgagacgccgccgacgcacctattg
cgggcagtggagcgcaagcgctcttaa
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