Pseudomonas khavaziana: QYQ93_07380
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Entry
QYQ93_07380 CDS
T10400
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pkv Pseudomonas khavaziana
Pathway
pkv03030
DNA replication
pkv03430
Mismatch repair
pkv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pkv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QYQ93_07380 (dnaE)
03430 Mismatch repair
QYQ93_07380 (dnaE)
03440 Homologous recombination
QYQ93_07380 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkv03032
]
QYQ93_07380 (dnaE)
03400 DNA repair and recombination proteins [BR:
pkv03400
]
QYQ93_07380 (dnaE)
Enzymes [BR:
pkv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QYQ93_07380 (dnaE)
DNA replication proteins [BR:
pkv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QYQ93_07380 (dnaE)
DNA repair and recombination proteins [BR:
pkv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QYQ93_07380 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
WWA78056
UniProt:
A0ABZ2DQ51
LinkDB
All DBs
Position
1684382..1687903
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGVDLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGVIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYLEVQRTNRPNDEEH
LHAAVALADRLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaagccactggtcaaaaccctggtgggcatgaacatgcctgcggtggcggtt
accgatcagaacaacatgtgctctctggtcaagttctacaaaaatgccatgggcgccggc
atcaagccgatctgcggtgttgacctgtggctgtccaacaaagacccggataaccccctt
agccgcatcagtctgctggcgatgaatggggtggggtatcgcaacctcaccgaactgatt
tcccgtggttttatcgacggccagcgcaacggctcgatcatcatcgagcgcgagtgggtc
gccgaagccagcgaaggcgtgatcatgctctcggcggccaaggagggtgaaattggtatc
gcgctgctgggcggtaatccccaggaagccgaagtgctggcccgcgaatggatgcaggtt
tttccggaccgcttctatttggaagtccaacgtaccaaccgccccaatgatgaagagcac
ctgcacgccgctgtggccctggccgacaggctgggcgcgccactggtggcgaccaacgat
gtgcgctttatcaagaaagaagatttcgaagcccacgaaacccgcgtgtgcatcggcgaa
ggccgggctctggatgacccgcgccgttcgaaaaactacagcgaagagcagtacctcaaa
agcgccgaagaaatggcggagttgttcagcgatttgcccgaggccctggaaaactccgtc
gagatcgccaagcgctgcaacattgaagtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgatgaatactttcgcaaggtgtcgttcgatggcctg
gaagagcgcctcagcgtcctgctgcccaaggacaccaccgaagactacgaagccaagcgc
caggtctatgttgaccggttgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtc
ggtccgggccgggggtcaggtgctggctcgctggtggcctatgtgcagaagattaccgac
ctcgatccgttggaatatgacctgctgttcgaacggttcctgaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgggtcatcgagtacgta
gccgagaaatacggccgcaacgcggtaagccagatcatcaccttcggttccatggccgcc
aaggcggtaatccgtgacgtggcgcgggtgcagggcaagtcctacggtttggcggatcgc
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gagatcctgcgcgacttcatcaaggtcgatgaagaggccgcagaaatctgggacatggcg
cgcaagcttgaaggcgtggtgcgtaacgtcggtaagcacgccggtggcgtggtgatcgcg
ccgaccaagctgaccgacttttcgccgatctattgcgatgaagaaggcgacggcctggtt
acccagttcgacaaagatgacgtggaggcggccggcctggtgaagtttgacttcctcggc
ctgcgcaccctgaccatcatcgactgggcgctcaagaccatcaatcgcgaccgtgccaag
gttggcgaagaaccgctggatatcgcgtttatcccgctggatgacaaaccgacctacagc
ctgttgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcattggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgaactggcgtacccgcactccgactaccagtacgagggcctcaagcccgtattggcg
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggcg
ggctacacccttggtggtgcggacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgtggcggtttcattgagggctgcgcaactaacaatatcgacgcc
gacctggcgggtaacatcttcgatctggtggagaagttcgccggttatggtttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagactgcctggctgaaagcccactac
ccggcgccgttcatggcggcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgcctcgacgcgccggacgtgaacgcc
tcggagttcaagttcacggtgaatgacgaaggccgcatcatctatggcctcggcgcgatc
aagggcgtgggcgaaggcccggtggaagccatcaccgaggcgcgccaggatgggccgttc
aaggacctgttcgatttttgtgcacgggttgacctcaaacgcatcaacaaacgtaccctc
gatggcttgatccgcagcggtgcactcgaccggctcggcccgtatttccatgatgagccg
aaggcttaccaggccaatatcgaccgcaatcgggcggtgctgctgactgccatggaagag
gcgatcaaggccgccgaacagaccgcccgtacccatgacagcggtcacgctgacttgttt
ggcgggttgttcgttgaagaagatgcggatgtttacgccaaccatcgcaaggccaaggag
ctgactctcaaggaacgcctgaaaggtgagaaagacaccttgggcctgtacctcaccggt
cacccgattgacgagtacgagggcgagatccggcgtttcgcccgccagcgcatcatcgac
ctgaaaccggcgcgcgatacccagaccgtcgccggcatgatcatcgccctgcgggtgatg
aaaaataagaagggcgataagatgggctttatcaccctggacgaccgttcgggccgtatc
gaggcgtcgctgtttgccgacgccttccactccgcccagtcactgctgcagaccgacgcc
atggtggtggtggaaggggaggtcagcaacgacgacttctccggcggcctgcgcctgcgc
atcaagcgggtgatgagcatggaagatgcccgtaccaacctcgccgagagcctgcgcttg
aaggtcaagaccgaagcactcaaaggcgatcagctacgctggttgggtgacctgctcaaa
cgtcaccgcggcgcgtgcccggtgaccatggagtacaccggcagcgacgccaaggccatg
ttgcagtttggcgagacgtggcgaattgatcccgccgatggcttgattcaagctttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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