Pseudomonas khavaziana: QYQ93_26620
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Entry
QYQ93_26620 CDS
T10400
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pkv Pseudomonas khavaziana
Pathway
pkv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QYQ93_26620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkv03021
]
QYQ93_26620 (rpoD)
Transcription machinery [BR:
pkv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QYQ93_26620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WWA76312
UniProt:
A0ABZ2DDD4
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All DBs
Position
5948461..5950311
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDPKAPKADDDTDDDEAEASSDDEDEVESGPDPVVAAQRFGAVSDQMEITRKALKK
HGRGNKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRTDFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLIALQTETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacactaggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagtc
gcgccagataaggactcccttatgctggccgacgctgataccgacgaggccgccgctgag
gaagctgctgccgcgctggctgcagtagagaccgatatcggccgcacgacggaccctgta
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccacattctctccgagtacactcgcgtcaccaccgaaggtggccgcctg
tccgacgtcctgagcggttatatcgacccggacgacggcattgcgccgcctgctgccgaa
gtaccgccgcctgtcgacccgaaagcccctaaagcagacgacgacaccgacgacgatgag
gctgaagccagcagcgacgacgaagatgaagtcgaaagcggcccggatcctgttgtcgcg
gcccagcgttttggtgcggtttccgatcaaatggaaatcacccgcaaggctttgaagaag
cacggtcgtggcaacaagcaggcaatcgccgagctggtagccctggctgagctgttcatg
ccgatcaagctggtgcccaagcagttcgaaggcctggttgagcgcgttcgcagtgccctt
gagcgtttgcgcgcccaagagcgtgcaatcatgcagctctgtgtgcgtgatgcgcgtatg
ccgcgtactgatttcctgcgccagttcccgggcaacgaagttgacgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccatcggtcgcctgcagccggatatc
atccgctgccagcagaagctgatcgcgttgcagaccgaaaccggtctgacgattgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacttgcgtctggtgatctccattgccaagaagtacaccaaccgt
ggcctgcagttcctcgatctgatccaggaaggcaacatcggcctgatgaaggcagtggac
aagttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtatcccggtgcacatgatc
gagaccatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaacgccgattggtgatgacgaagactcc
cacctgggtgacttcatcgaggactcgaccatgcagtcgccaatcgatgttgccaccgtt
gagagcttgaaagaggcgacccgcgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcgcatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtgacccgcgagcggattcgtcagatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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