Planococcus koreensis: ACM1PH_00340
Help
Entry
ACM1PH_00340 CDS
T11311
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pkw Planococcus koreensis
Brite
KEGG Orthology (KO) [BR:
pkw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACM1PH_00340 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkw03021
]
ACM1PH_00340 (rpoD)
Transcription machinery [BR:
pkw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACM1PH_00340 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF2408
Drf_FH3
Motif
Other DBs
NCBI-ProteinID:
XOO55992
LinkDB
All DBs
Position
62703..63857
Genome browser
AA seq
384 aa
AA seq
DB search
MAEKSEHQNEVEASNVSLSSEAPEATVEEAKKQLIEIGKKTGELNYEQIADKLAVFEMES
DAVEEFIDQLEGHGIELERKSDDEEHLDRLMKPTEDKFDLNDLSVPPGVKINDPVRMYLK
EIGRVDLLKAEEEVRLAKLIEQGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEG
NMGLIKAVEKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQR
QLLQDLGREPSPEEIGEEMDLLPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSDA
QSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIR
QIEAKALRKLRHPSRSKRLKDFLE
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaaatcagaacaccaaaacgaagtagaagcaagcaatgtgtcattgagttca
gaagcgccagaagcaacagtcgaagaagcgaaaaagcaattaattgaaataggtaaaaaa
accggagaactgaattatgagcagattgccgataaattagcggtttttgaaatggaatcg
gatgcagtggaagaattcatcgaccagctcgaaggccatggcattgagcttgaacgcaaa
tcagatgacgaagagcatttggaccgcctcatgaaaccgactgaagacaaattcgacttg
aacgacttgagcgttcctcccggcgtcaaaatcaatgacccggtcagaatgtacttgaag
gaaatcgggcgtgtcgaccttttgaaagccgaagaagaagtccgtctcgcaaaattgatt
gaacaaggcgacgaagaagccaagaaacggttggcagaagcgaacttgcgcctcgtagtc
agtatcgcaaaacgctatgtcgggcgcggcatgctgttcctggatttgatccaggaaggg
aatatgggcctgatcaaagcggtggaaaaattcgattactcgaaaggctttaaattcagt
acgtacgccacatggtggatccgccaggccatcacacgcgcgattgctgaccaagcgcgg
acaatccgcatcccggtgcacatggtcgaaacgatcaataaattgatccgcgtccaacgc
caattgctgcaggatttaggccgcgaaccttcaccggaagaaatcggcgaagaaatggat
cttttgcctgaaaaagtccgtgaaatcctgaaaattgcacaagaacctgtatcgctggaa
acgccgatcggcgaagaagacgattcacatttgggagatttcatcgaggattccgatgcg
cagtcgccatcggaccacgctgcatacgaattattgaaagaacagcttgaagacgttctg
gatactttgacagaccgtgaagaaaatgttttgcgcctgcgtttcggccttgacgacggc
cgcacgcgcacacttgaagaagtgggcaaagttttcggcgttacacgcgaacgcattcgc
caaattgaagcgaaagcgctacgcaaattgcgccacccttcacgcagcaaacgattgaaa
gacttcctcgaataa
DBGET
integrated database retrieval system
