Psychrobacter sp. KH172YL61: PKHYL_14050
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Entry
PKHYL_14050 CDS
T08351
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pky
Psychrobacter sp. KH172YL61
Brite
KEGG Orthology (KO) [BR:
pky00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pky03016
]
PKHYL_14050
Enzymes [BR:
pky01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PKHYL_14050
Transfer RNA biogenesis [BR:
pky03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PKHYL_14050
Prokaryotic type
tRNA splicing ligases
PKHYL_14050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF7075
Motif
Other DBs
NCBI-ProteinID:
BBI67214
LinkDB
All DBs
Position
complement(1122237..1123139)
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AA seq
300 aa
AA seq
DB search
MQPINHNIIQDGGTPIRLWTKGVPVDPKAHDQLIKASQMPFIYKWLAVMPDVHVGIGATI
GTVLPTKEAIIPAAVGVDIGCGMMAVQTTLSADDLPDNLHGLRTELEKAIPHGRSKTRGR
GSRRDVGAWANPDDTVMNGWGTLVDDFNYLTQKHPKLKNTNNLKHLGTLGTGNHFVEVCL
DETNQVWIMLHSGSRGVGNAIGRYFIELAREDMRKWFINLPDKDLAYFAEGTEHFDDYWF
AVGWAQRFAFKNREIMMEKAIQALRTIVPKPFDAAVKAVNCHHNYVAKEEHYGEGSLCHA
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctatcaatcacaatatcattcaagacggtggcacccctatccgcctatggacc
aaaggcgtgcctgtcgacccaaaagcccacgaccagctgattaaagcctcacagatgccc
tttatttataagtggctcgcggtgatgcctgatgtccatgtcggtatcggtgcgaccatc
ggtacggtgctgccgaccaaagaagcgattatcccagcagcggtcggcgtggatatcggc
tgcggcatgatggcggtgcagaccacgctgtccgcagatgatttgcccgacaacctgcac
ggtctgcgcaccgagctggaaaaagccattccgcatggacgcagcaagacacgcggtcgc
ggctcgcgccgtgacgtgggcgcgtgggcgaaccctgatgataccgtgatgaatggctgg
ggtacgctggtcgatgattttaattatctgacccaaaagcatcccaaactaaaaaacacc
aacaatctaaagcatttgggcactctgggtacaggcaatcactttgttgaggtgtgcctt
gatgagaccaatcaggtgtggattatgctgcattcaggctcacgcggcgtgggcaatgcc
atcgggcgctactttattgagctggcgcgtgaggacatgcgcaaatggtttattaacctg
cctgataaagatttggcgtattttgctgaggggactgaacattttgacgattattggttt
gcggttggctgggcgcagcgctttgcctttaaaaaccgcgaaatcatgatggaaaaagcc
atccaagcgctacgcaccatcgtgccaaaaccgttcgatgctgcggtaaaagcggtcaac
tgtcaccacaactatgtggcaaaagaagagcactacggcgagggaagtctttgtcacgcg
taa
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