Psychrobacter sp. KH172YL61: PKHYL_25680
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Entry
PKHYL_25680 CDS
T08351
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pky
Psychrobacter sp. KH172YL61
Pathway
pky03420
Nucleotide excision repair
pky03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pky00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PKHYL_25680 (uvrD)
03430 Mismatch repair
PKHYL_25680 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pky03400
]
PKHYL_25680 (uvrD)
Enzymes [BR:
pky01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKHYL_25680 (uvrD)
DNA repair and recombination proteins [BR:
pky03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PKHYL_25680 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PKHYL_25680 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
LptE
Motif
Other DBs
NCBI-ProteinID:
BBI68377
UniProt:
A0A7U6KQD1
LinkDB
All DBs
Position
complement(1975451..1977649)
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AA seq
732 aa
AA seq
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MTTSIFDTRRYKYPQNFLEMKPKLARLEQAIKKLETNLIDANDQANTKLLTQRLDSHLGL
KVDYASELNPDQLMAATTIEGKVLVIAGAGSGKTKTLTYRTSYLLENGVSPKEILLLTFT
RKAANEIKDRAKSLLASSLSNQELSDDALAEDKLPTDKALNNITSGTFHSFCNMLLRQYS
GLLGINPRFTILDTGDSEDAIDLVHKEKKYPTQTKTQAFPRKKTLQNIISTSRNRRIPIR
DLIESSYPDIAVHIPIIEQLAIDFHEYKRANHLYDFDDIISQVVRHLKTNDTFRQRLQNT
YRYVMVDEYQDTNIPQKQLIDLICEPDSVSLMVVGDDNQSIYAFRGANYENILLFGETYP
NAKLIKLEQNYRSTPSVLNYINALSAQITLGYQKQLYSDAPIAGDKPIFRRLSDETKEAS
YITDKIVALKPEYDYNDFAVLCRTSFQSNYVQLEFMARNIPFIVVGGIKFIERRHIKDVL
AFVKVLYNPNDTIAWHRILTLFKGVGAVTATRLTQAITADNNAFESLLAASFAKKSDQLK
PLYHTLTKAQQAETVETAIEHILEFYIPVLKLIEDNWRERSEDFRVLKNLATEHTSLDSF
LENLALDPPNDSVAVMESSDDGQSNDKVTISTIHSAKGLEWPVVFVNSLVDGITPHHRSL
DDFEALEEERKLFYVACSRAKTQLYLTAPNYFSSYSGYFDMASRFIAELSADEVTVETVK
SPIKKNDDPIWW
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacaacctcgatttttgatacacgccgctataaatatccacagaattttcttgagatg
aagcccaaacttgctcgacttgagcaggccatcaaaaagctcgagacaaacctcattgac
gctaatgatcaagcaaatacgaagctgttgacgcaaaggttggatagtcatttgggattg
aaggtcgactatgccagtgagctcaatcccgatcagctcatggctgccaccactatcgaa
ggtaaagtgttggtgattgcgggtgcaggatcgggcaaaaccaagactttgacctatcgc
accagctatttgctcgaaaacggcgtgtcacctaaagagattttgctactaacctttact
cgtaaagcggcaaatgaaatcaaagatcgcgctaaatctttgctggcaagtagtctttca
aatcaagagctatctgatgatgcattggctgaagataagctcccaactgacaaggcatta
aataatatcaccagtggcacctttcactcattttgcaatatgctgctgcgtcaatactct
ggtctgctcggtatcaatccacgatttacgattttagatactggcgatagcgaggatgct
atcgacttggtacataaagaaaaaaagtatcctacccaaaccaaaacccaagcctttccg
cgcaaaaaaacattgcaaaatatcatttcaacctctagaaacagacgcattcctattcgc
gacctaatagaaagtagctatcctgatatcgccgtacatattcctatcatcgagcaatta
gcaattgattttcatgagtataagcgcgccaatcacttatacgattttgacgacattatc
agtcaagtggtacgtcatctaaaaaccaacgacacctttaggcagcgacttcaaaacaca
tatcgttatgtcatggttgatgaatatcaagacaccaatattccgcaaaagcagctaatt
gacttaatatgtgagcctgattcggtgtcactaatggtcgttggcgatgacaatcaaagc
atctatgcctttcgcggtgctaattacgaaaatattttgctatttggtgagacgtatccc
aatgccaaacttatcaagcttgagcaaaattatcgcagtacaccttcggtactaaactat
atcaacgcgttgtcagcgcaaatcacgctaggctatcaaaagcagctgtattctgatgcg
ccaatagcaggcgacaagccaatatttcgacgactcagcgatgagacaaaagaagcgagt
tatatcactgataagatagtcgcgctaaagcctgagtatgattataacgactttgcggta
ttgtgccgcacgtcttttcagtccaattatgtacagctagaatttatggcgcgcaatatt
cccttcatcgtggtgggcggtatcaagtttattgaaagacgccatatcaaagacgtgttg
gcttttgtcaaagttctctataacccgaacgatacgattgcttggcatcgtattttaact
ttgtttaaaggggtaggagcagtcacggcgacgcgcttaacccaagccatcaccgctgac
aataatgcgtttgagtcgctactggcagcatcgtttgccaaaaaaagcgatcagctaaag
cctctataccacacgcttaccaaggcccagcaagcagaaacggttgagacagccattgag
catattcttgagttttatatccctgtgttaaagttgatagaagacaactggcgtgagcgt
agcgaggactttcgggtgctaaagaatttagcgacagagcacacgagcctcgatagcttt
ttagaaaatcttgcgctcgatccgcccaatgactcagtcgcggtcatggaaagctctgac
gatggacaaagtaatgataaagtcacgatctcaaccattcatagcgcaaaagggcttgag
tggccagtggtgttcgtcaattcattggtcgatggcatcacgccgcatcatcgctcattg
gacgactttgaagcattagaagaagagcgtaagctgttttatgtggcctgtagtcgtgcg
aagacgcagctgtatttgaccgcgccgaattacttctctagttactctggatactttgat
atggcctcacgctttattgcggaactatcggctgacgaggtaacagtagagacggtaaaa
tcgcctatcaagaaaaatgatgacccaatatggtggtga
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