Pichia kudriavzevii: C5L36_0A08820
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Entry
C5L36_0A08820 CDS
T06133
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pkz
Pichia kudriavzevii
Pathway
pkz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C5L36_0A08820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkz03019
]
C5L36_0A08820
03041 Spliceosome [BR:
pkz03041
]
C5L36_0A08820
03009 Ribosome biogenesis [BR:
pkz03009
]
C5L36_0A08820
03016 Transfer RNA biogenesis [BR:
pkz03016
]
C5L36_0A08820
Enzymes [BR:
pkz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C5L36_0A08820
Messenger RNA biogenesis [BR:
pkz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
C5L36_0A08820
Spliceosome [BR:
pkz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
C5L36_0A08820
Complex C
U4/U6.U5 tri-SnRNP related factors
C5L36_0A08820
Ribosome biogenesis [BR:
pkz03009
]
Eukaryotic type
Pre-60S particles
Helicases
C5L36_0A08820
Transfer RNA biogenesis [BR:
pkz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
C5L36_0A08820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
40381998
NCBI-ProteinID:
XP_029319765
UniProt:
A0A099NZ86
LinkDB
All DBs
Position
1:1952302..1955517
Genome browser
AA seq
1071 aa
AA seq
DB search
MDDLFDVFEEAPDAQLLNSDNGKSNNKRQSENLNQHENVSENPSENAKTKKPRRYENRLI
ENKESKKNLEVVPVVADDLEIEASREVDASEGLMTKSSNDKVENENADNNKVKLKHQVRH
QVAVPPNYDYIPIGQHKRKDEARTYPFTLDPFQDTAISCIDREESVLVSAHTSAGKTVVA
EYAIAQSLKNHQRVIYTSPIKALSNQKYRELQAEFGDVGLMTGDVTINPDAGCLVMTTEI
LRSMLYRGSEIMREVGWVIFDEVHYMRDKSRGVVWEETIILLPDNVHHVFLSATIPNAME
FAEWICKIHNQPCHIVYTDFRPTPLQHYLFPTGGEGIHLVVDEKGTFKEENFQKAMSSIS
NSMGEDSGSIDSKGKGGKSWKGGIRDGKSDIYKIVKMIWMKKYNPVIVFSFSKKDCEALA
MKMSKLDFNTDEERSMLTKIYENAIQMLPEDDRELPQIKHILPLLKRGIGIHHSGLLPIL
KEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGR
AGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGVADRLDSAFHLGYNMILNLLRVEGVSPEF
MLQNSFFHFQNTVAVPLLEKQIDEMKDKIDNIHIDDYETVREFYDIKKQLLNYEEDCRKI
ITHPSNMLPHLKSGRMIKVKVGDDNYGWGIAISYSKFENRRVNGSVSAVSDHDSYIVKVF
VNTMFADAPVNLIKPFDPKLPLGIRPAKDGEPTRNEIIPITLNSIQEVSSCRSILPKDLD
STQSRKTLSKALKEIVKRHPDGLPNLDPVTKMKIADEDFLTILKKIEILKTKLETHPLFH
SIKLNESYEKYSEKARLEEKIKETELKIAAVQSNIQLDDLKRRKRVLRRLGFISTDDIVE
LKGKVACEISTGDELLLTELIFNGTFTDLTPAQCAALLSCFVFQERSRETRKPNPLLDEP
YKALTEMASNIAKVSKEAKLEITEKAYVESFRSELMDVVYRWCEGASFTEICQMTDVYEG
SLIRTFRRLEELLKQIVEAAKTIGNVELEGKMTECEKLIHRGIIAANSLYL
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctatttgatgtttttgaagaggctcctgatgctcagctgttaaacagcgac
aacgggaaatccaataacaaacgacaaagtgaaaatttgaatcaacatgagaatgtgagt
gaaaatcctagtgaaaatgcaaaaactaagaaaccaaggagatacgagaatagattgata
gagaacaaagagagcaagaaaaacttagaggtggtcccggttgttgcagatgacttggag
attgaagcttcacgtgaagtcgatgccagtgaaggtttgatgacaaaatcttcaaatgac
aaagttgagaatgaaaatgcagataataacaaggtcaaattgaagcatcaggttcgtcat
caagtagctgtgccaccaaattatgattatattcctattggtcaacacaaacgtaaggac
gaggcacgtacttacccattcactttggatccttttcaagatacggcaatttcttgtatc
gatagagaagagtctgttttagtttcagcccacacatcagccggtaaaactgttgttgca
gagtatgcaattgctcaatcattgaaaaaccaccaaagagtcatttacacatcgccaatc
aaagctttaagtaaccaaaagtatagagaactacaagcagaatttggtgatgttggcttg
atgactggtgatgttacaattaatcctgatgctggatgtttagtcatgactactgaaatt
ttgagatctatgttgtatagaggctctgaaattatgagagaagttggttgggtgattttc
gacgaagttcattatatgagggacaaatcaagaggtgttgtttgggaggagaccatcatt
ttattacctgataacgtacatcacgtcttcttgtctgcaactatccccaatgccatggag
tttgcagaatggatttgtaaaattcataaccaaccatgtcatatcgtttacacagatttc
agaccaactcctttgcaacattatctatttcctactggtggtgaaggtatccatctcgtt
gttgacgagaagggaacatttaaagaggaaaatttccaaaaggccatgtcttcaattagc
aatagtatgggtgaagattctggctcgatcgattcaaagggtaaaggaggtaaatcatgg
aaaggtggtatcagagatggaaaatccgatatttataaaattgtcaaaatgatctggatg
aagaaatacaatccagtcattgttttctcattttcaaagaaagactgtgaagccttagct
atgaaaatgtccaaacttgatttcaacactgatgaagaaagatcaatgcttaccaaaatt
tatgaaaacgctattcaaatgttgccagaagatgacagagaactaccccagataaagcat
attctacctttgttgaagagaggtatcggtattcaccattctgggctattgccaattttg
aaagaaatcattgaaattctattccaagaaggattcctaaaagttttgtttgctacagaa
actttttcaattggtttgaatatgcctgctaaaacagttgttttcacttccgttagaaaa
tgggatggtgttgggttccgttgggtgtcaggtggtgagtatatccaaatgtctggtaga
gctggtcgtagaggtttagatgatcgtggtattgttatcatgatgatcgatgaaaaaatg
gaaccccaagttgctaagggtatggtcaaaggtgttgctgataggctagactctgcattc
catttaggttacaatatgattcttaatttattgagggtagaaggtgtttcacccgaattt
atgttacagaactctttcttccattttcaaaacaccgttgccgttccacttctagagaaa
caaatcgatgaaatgaaggacaaaatcgacaatatccatatagatgactacgaaacagtc
agagaattttatgacattaagaaacaattgcttaattatgaagaagactgcaggaagatc
attactcatcctagcaacatgttgccacatttgaagagtggtaggatgataaaggttaag
gtgggggatgataattacggatggggaattgctattagctattccaaatttgaaaataga
agagtcaatggctctgtttcagctgtatctgatcatgatagttatattgttaaagtattc
gttaatacaatgtttgccgatgcaccagtgaatctcattaaaccttttgaccccaaactg
ccacttggtataagaccagctaaggacggtgaaccaacgagaaatgaaattatcccgatc
actttgaattctatccaagaggttagtagttgcagatctattttaccaaaagatctagat
agtactcaatcaagaaaaactttaagtaaagccttgaaagaaattgtgaagagacaccca
gatggcctcccaaatctcgacccggtcacgaagatgaagattgcagatgaagatttcctc
actatattgaaaaagattgaaatcttaaagactaaattagagacacacccattattccac
tctattaagctaaacgaatcatatgagaagtactcagaaaaagccagacttgaagagaaa
atcaaagagacagaactaaaaattgctgctgttcagtctaatatccaacttgacgacttg
aaacgtcggaagagagttcttagacgtttgggttttatttcaactgacgatatagttgaa
ttgaagggtaaagttgcctgtgaaattagtacgggtgatgagcttttacttacggaatta
attttcaacggtacctttactgatttaactccagctcagtgtgctgctctactatcatgt
tttgtcttccaagaaagatcaagggagacaagaaagccaaacccgcttttagatgaaccg
tacaaggcgttaaccgaaatggctagtaacattgctaaggtttccaaggaggcaaaatta
gaaattacagaaaaggcctacgttgagtcattccgttcggaattgatggatgttgtttac
cgttggtgtgagggagctagttttaccgagatttgccaaatgactgatgtatatgaaggt
tcgttgattagaactttcagaagattagaagaattattgaaacaaattgtcgaagcagct
aaaaccattggaaatgtagaactagaagggaaaatgaccgaatgtgagaaacttatccat
agaggtataattgcagctaactccttgtatttatag
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