KEGG   Parvibaculum lavamentivorans: Plav_1260
Entry
Plav_1260         CDS       T00580                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
pla  Parvibaculum lavamentivorans
Pathway
pla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Plav_1260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pla03021]
    Plav_1260
   03019 Messenger RNA biogenesis [BR:pla03019]
    Plav_1260
Transcription machinery [BR:pla03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Plav_1260
Messenger RNA biogenesis [BR:pla03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Plav_1260
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: ABS62880
UniProt: A7HSJ7
LinkDB
Position
1391664..1392932
AA seq 422 aa
MTTQIKLQDLKAKSPTELLAIAEELEVENASTLRTQDMMFAILKQYAEQNIDIIGEGVVE
VLPDGFGFLRSPEANYLPGPDDIYVSPSQIRRFSLRTGDTVEGEIRSPKDGERYFALLKV
STVNFESPDKARHKVHFDNLTPLYPDEKLEMEVADPTLKDRSSRLIDIVAPLGKGQRGLI
VAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA
TRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQR
PKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVFP
AMDILKSGTRKEELLVDKGTLSKMYVLRRILNPMGTVDAVEFLLDKLKQTKSNGEFFDSM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgacgacgcagatcaagctgcaggacctcaaggcaaaatcgccgaccgaacttctggcg
attgccgaggaactcgaggtcgagaacgcctcgacgctcaggacgcaggacatgatgttc
gcgatcctgaagcagtatgcggaacagaatatcgacatcatcggcgaaggcgtggtcgag
gtgctgccggacggcttcggcttcctgcgctctcccgaagccaactacctgccgggtccc
gacgatatttacgtctcgccctcgcagatccgccgcttctcgctccgtaccggcgacacg
gtcgaaggcgagatcaggagcccgaaggatggcgagcggtatttcgcgctcctcaaggtc
tcgacggtcaatttcgagagccccgacaaggcccgccacaaggtccatttcgacaatctg
acgccgctctatcccgacgagaagctcgagatggaagtcgccgatccgacgctgaaggac
cgctcctcgcggctcatcgacatcgtcgcgccgctcggcaagggccagcgcgggctgatc
gtcgcgccgccgcgcacgggcaagaccgttctcctccagaacatcgcgcattcgatcacg
accaaccacccggaatgctatctgatcgtgctgctgatcgacgagcggccggaagaagtg
accgacatgcagcgttcggtgaagggcgaggtcatctcgtccaccttcgacgagccggcg
acgcgccacgtccaggtcgccgaaatggtgatcgagaaggcaaagcgcctcgtcgaacac
ggacgcgacgtcgttatcctgctcgactcgatcacgcgtctcggccgcgcctacaacacg
gtcgtcccgtcctccggcaaggtgctgaccggcggtgtcgacgcgaacgcgctgcagcgc
cccaagcgtttcttcggcgccgcgcgcaatatcgaggaaggcggctcgctcaccatcatc
gcgaccgcgctcatcgataccggcagccgcatggacgaagtcatcttcgaagaattcaag
ggcaccggtaactcggaaatcgtcctcgaccgcaagatcgccgacaagcgcgtcttcccg
gcgatggacatcctcaaatccggcacccgcaaggaagagctgctggtcgacaagggcacg
ctctcgaaaatgtatgtgctccgccgcatcctcaacccgatgggcaccgtcgacgcggtc
gaattccttctcgacaagctcaagcagacgaagagcaacggcgaattcttcgactcgatg
aatacctga

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