Parvibaculum lavamentivorans: Plav_2317
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Entry
Plav_2317 CDS
T00580
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plav_2317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pla03021
]
Plav_2317
Transcription machinery [BR:
pla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plav_2317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Syntaxin_2
FapA
Motif
Other DBs
NCBI-ProteinID:
ABS63931
UniProt:
A7HVJ8
LinkDB
All DBs
Position
2488356..2490326
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AA seq
656 aa
AA seq
DB search
MAKTAEQTEAPEAAPEAPQDGPLLDMSDAAVKKMIKAAKARGFVTYDELNKVLPSEEFSS
EQIEDTLSMLSEMGINVVENDEAEDNAEGADGEADEDRDDEEAPTGKAVATTTTTSSSLD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELN
EGKILLRDIIDLDATFAGPDAKKVDHSQAALAGEAPPRIEPEEEEVDEDGEDDNSMSLAA
MEAELKPKVLETFDTIAADYKKLRKLQDQKVELALQGEALSSAQEKKYQKLTSDLIEEVK
SLSLNNNRIESLVEQLYAINKRLMGLEGRLLRLAESHGIPRDEFLKQYFGNELDPNWIRR
VSRLKGKGWVNFTKDERDQVKDLRQEIQTLASETGLDIQEYRRIVSGVQKGEREARIAKK
EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKV
LKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREER
VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacagcggaacagacggaagcacccgaagcggcacccgaggcgccgcaggat
gggccgcttctcgacatgtccgatgcggcagtcaagaagatgataaaggccgccaaggcg
cgcggcttcgtcacctatgacgagttgaacaaggttctgccgtccgaggagttctcctcc
gagcagatcgaggacacgctgtcgatgctctcggaaatgggcatcaatgtcgtcgagaac
gacgaggccgaggacaacgccgaaggcgccgacggcgaagcggatgaagaccgcgacgac
gaagaggcgcccactggcaaggccgtcgccaccacgaccaccacctcgtcctcgctcgac
cggacggacgatccggtccgcatgtatctgcgcgaaatgggttccgtcgagcttctgtcg
cgtgaaggcgaaatcgctatcgccaagcgcatcgaggccggccgcgaaaccatgatcgcc
gggctctgcgaaagcccgctcaccttccaggccatcatcatctggcgcgacgaattgaac
gagggaaagattctccttcgcgacatcatcgatctcgacgccactttcgccggtcccgat
gcgaagaaggtcgaccacagccaggccgcactcgccggcgaggcgccgccgcgcatcgaa
ccggaagaggaagaagtcgacgaggatggcgaggacgacaactccatgtcgctcgccgcg
atggaagccgagctgaagccgaaggttctcgaaaccttcgacaccatcgccgccgactac
aagaagctccgcaagctgcaggaccagaaggtcgaactggcgctgcagggcgaggcgctt
tcctccgcgcaggaaaagaaataccagaagctcacatcggacctcatcgaggaagtgaag
agcctttcgctcaacaacaaccgcatcgaaagccttgtcgagcagctctacgcgatcaac
aagcgcctgatgggtctcgaaggacgcctgctgcgtctcgccgaaagccacggcatcccg
cgcgacgaattcctgaagcagtatttcggcaatgagctcgacccgaactggattcgccgc
gtcagccgcctgaagggcaagggctgggtcaacttcacgaaggatgagcgcgaccaggtg
aaggatctccgtcaggaaatccagacgctcgcctccgaaaccggcctcgacatccaggaa
taccgccgcatcgtttcgggcgtgcagaagggcgagcgcgaggcgcgcatcgccaagaag
gaaatggtggaagcaaacctccgcctcgtcatttccatcgccaagaaatacacgaaccgc
gggctgcaattcctcgatctcatccaggaaggcaatatcggcctcatgaaggcggtcgat
aagttcgaataccgccgcggctacaagttctcgacctatgcgacgtggtggatccgtcag
gcgatcacgcgctcgattgcggaccaggcgcgcaccatccgcatcccggtccacatgatc
gagacgatcaacaagctggtgcgcacctcgcgccagatgctccacgaaatcggtcgcgag
ccgacgccggaagagctcgccgaaaagctcggcatgccgctcgaaaaggtccgcaaggtg
ctgaagatcgcgaaggagccgatctcgctcgaaacgcccatcggcgacgaggaagacagc
cacctcggcgacttcatcgaggacaagaacgcgatcctaccgatcgacgccgcgatccag
tcgaacctgcgcgagacgacgacccgcgtgctggcctcgctcacgccgcgcgaggagcgc
gtgctccgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaagtcggc
cagcaattctcggtaacgcgcgaacgcatccgccagatcgaagccaaggcgctccgcaag
ctgaagcacccgagccgcagccggaagttgcgctcgttcctcgacaactaa
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