Parvibaculum lavamentivorans: Plav_3632
Help
Entry
Plav_3632 CDS
T00580
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plav_3632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pla03019
]
Plav_3632
03016 Transfer RNA biogenesis [BR:
pla03016
]
Plav_3632
Enzymes [BR:
pla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Plav_3632
Messenger RNA biogenesis [BR:
pla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Plav_3632
Transfer RNA biogenesis [BR:
pla03016
]
Prokaryotic type
tRNA degradation factors
Plav_3632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
ADH_Fe_C
DUF7357
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ABS65230
UniProt:
A7HZ97
LinkDB
All DBs
Position
3888557..3890743
Genome browser
AA seq
728 aa
AA seq
DB search
MFKITREEIEWGGRTLVLETGKIARQADGAVLATYGDTTVLATVVGERKPKPGLDFFPLT
VNYQEKTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFIKGFKNETQVIATVVSH
DMENDPDIVAMIAVSAALTISGLPFLGPIGAARVGYIGGEYKLNPMIDEMPESALDLVVA
GTADAVMMVESEAKELSEDIMLGAVMFGHKEFQPVIDMIIRMAEKCAKEPRAIDVKDNSE
LVAKVRELAESDVRAAYGLKDKGQRHEALAAAKDKVKSALCNPEDPNAVSETDVGGVFKS
IESDVVRNSILDTKSRIDGRDLETVRPIVSEVGVLPRTHGSALFTRGETQALVVATLGTG
DDEQFIDALEGTYKENFLLHYNFPPFSVGETGRVGFTGRREVGHGKLAWRALRAVLPPKT
EFPYTLRLVSEITESNGSSSMATVCGSSLAMMDAGVPLKRAVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGTQEGVTSLQMDIKITGINERIMKQALAQAKGGRLHILGEMAK
ALDTARPEMGEYAPRIEVITVPTDKIREVIGTGGKVIREIVEKTGAKVDISDDGTIKVAS
SDGESIRKAIAWIQGIVAEPEVGKIYEGTVVKAVDFGAFVNFFGPRDGLVHISQMAPTRV
EQVSDVVKEGDKVKVKLLGFDDRGKVRLSMKHVNQETGEEIVYENEPAEQPREKREGGGG
RGRRRERD
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaatcacacgcgaagaaattgaatggggcggccgtacgctcgtcctcgaaacg
ggcaagatcgcccgtcaggccgatggcgcggttctcgcgacctacggcgacaccaccgtt
ctcgccaccgttgttggcgaacgcaagccgaagcccggcctcgatttcttccccctgacc
gtgaattatcaggaaaagacctatgccgcgggcaagattcccggcggcttcttcaagcgt
gaaggccgtccgagcgaaaaggaaacgctcgtctcccgcctgatcgaccgtccgatccgt
ccgctcttcatcaagggcttcaagaacgaaacccaagtgatcgccaccgtcgtcagccac
gacatggaaaacgatcccgacatcgtcgccatgatcgcggtctccgccgcgctcaccatt
tccggcctgcctttccttgggcccatcggcgccgcgcgcgtcggctatatcggcggtgag
tacaagctcaacccgatgatcgacgagatgcccgaaagcgcgctcgacctcgtggtcgcc
ggcaccgccgacgccgtgatgatggtggaatcggaagcgaaggaactttccgaagacatc
atgctcggcgccgtcatgttcggccacaaggaattccagccggtgatcgacatgatcatc
cgcatggccgagaaatgcgcgaaggagccgcgcgccatcgacgtgaaggacaattccgaa
ctcgtcgccaaggtgcgtgagctggccgaaagcgatgtccgcgccgcttatggcctgaag
gacaagggccagcgtcacgaggcgctcgccgccgcgaaggacaaggtgaaatccgccctc
tgcaatccggaagatccgaacgccgtttcggaaacggatgtcggcggcgtcttcaagagc
atcgaaagcgacgtcgtccgcaactcgatcctcgacacgaaaagccgcatcgatggccgc
gatctcgaaaccgttcgccccatcgtctcggaagtgggcgtgctcccgcgcacgcatggt
tcggcgctcttcacgcgcggcgaaacgcaggccctcgtggtggcgacgctcggcaccggc
gatgacgagcagttcatcgacgcgctggaaggcacctacaaggaaaacttcctgctgcac
tacaacttcccgcccttctccgtcggcgagacgggccgcgtcggcttcaccggccgccgc
gaagtcggtcacggcaagctcgcctggcgcgcgctccgtgcggtgcttccgcccaagacc
gagttcccctacacgctgcgcctcgtctcggaaatcaccgagtcgaacggttcctcctcg
atggcaaccgtttgcggctcctcgctcgcgatgatggatgcgggtgtgccgctgaagcgc
gccgtcgccggcatcgccatgggcctcatcctcgaaggtgagcgtttcgccgttctgtcg
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtggcgggcacgcag
gaaggcgtgacctcgctccagatggacatcaagatcaccggcatcaacgagcgcatcatg
aagcaggccctcgcccaggcgaagggcggccgcttgcatattctcggcgagatggcgaaa
gctctcgacacggcccgccccgaaatgggcgaatacgcgccgcgtatcgaagtgatcacc
gtgccgaccgacaagatccgtgaagtcatcggcacgggcggcaaggtcatccgcgagatc
gtggaaaagacgggcgccaaggtcgacatttccgacgacggcaccatcaaggtcgcctcg
tccgacggcgagtcgatccgcaaggcgatcgcctggattcagggcattgtcgccgagccg
gaagtcggcaagatctatgagggcacggtcgtgaaggcggtcgatttcggcgccttcgtg
aacttcttcggcccgcgcgacggtctcgtgcacatctcgcagatggcgccgacccgcgtg
gagcaggtctccgatgtcgtcaaggaaggcgacaaggtcaaggtcaagctcctgggcttc
gatgatcgcggcaaggtccgcctgtcgatgaagcatgtgaaccaggaaaccggcgaagag
atcgtctacgaaaacgagcccgccgagcagccccgcgaaaagcgcgaaggcggcggtggt
cgcggtcgccgtcgcgaacgcgactga
DBGET
integrated database retrieval system
