Plantactinospora sp. BC1: C6361_05825
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Entry
C6361_05825 CDS
T05377
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plab
Plantactinospora sp. BC1
Pathway
plab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6361_05825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plab03019
]
C6361_05825
03009 Ribosome biogenesis [BR:
plab03009
]
C6361_05825
Enzymes [BR:
plab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6361_05825
Messenger RNA biogenesis [BR:
plab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6361_05825
Ribosome biogenesis [BR:
plab03009
]
Prokaryotic type
rRNA helicases
C6361_05825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVT29090
LinkDB
All DBs
Position
1394265..1396019
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AA seq
584 aa
AA seq
DB search
MSSDSAPPAPPVSTSPNDSDDGSGTFADLGLRTELLDALGTLGYEEPTAIQRAAIPPLLA
GQDLLGQAATGTGKTAAFALPLLHRLPEGRRSGAPVALILVPTRELAVQVSEAIHRYGRE
LGVRVLPIYGGQPIARQLRALDGGVDVVVATPGRALDHIARDTLRLDGLATVVLDEADEM
LDMGFAEDIEAILQHVPEQRQTVLFSATMPARIDGMARQYLRDPARIEIGRQPAPTGTAP
LVRQTAYVVARAHKPAALGRVLDVEAPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGG
MTQEQRDRVMGRLRAGTADLLVATDVAARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGR
AGRQGVAITLAEPREHRMLKTIERTTGQRISIDKIPTVADLRTRRLEMTRAALHESLLED
DLDPFRVIVETLTDEFDVMEVALAAVKLAHESAGGGPVDEEEDIPQVAFRSDRDGRARRD
GGRDGGRDDRRAARPRSGDMACLFIGVGRRAGIRPQDLVGAITGETAVSGREIGSIEIAD
RFSLVEVPRSAANEVITRLRQSTIKGRKATVRRDREVGRDQRDG
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgacagcgcaccacccgctccgccggtcagcaccagcccgaacgactccgac
gacggctccggcaccttcgccgacctcgggctgcggaccgaactcctggacgcgctcggc
acgctcggctacgaggagccgaccgccatccagcgggccgccatcccgcccctgctggcc
ggccaggacctgctcggccaggccgccaccgggaccgggaagaccgccgcgttcgcgctg
ccgctgctgcaccggctgccggaggggcggcgttccggtgcgccggtggcgctgatcctg
gtaccgacccgggaactggcggtgcaggtctccgaggcgatccaccggtacggccgcgaa
ctcggcgtacgggtgctgccgatctacgggggccagccgatcgcccggcaactgcgggca
ctggacggcggagtggacgtggtggtggccaccccgggacgggcgctggaccacatcgcc
cgggacactctccgactcgacggcctcgcgaccgtcgtgctggacgaggcggacgagatg
ctcgacatggggttcgccgaggacatcgaggcgatcctgcaacacgtaccggagcaacgg
cagacggtgctcttctccgccaccatgccggcccggatcgacgggatggcccggcagtac
ctgcgggacccggcccggatcgagatcggccggcagccggcgcccaccggcaccgccccg
ctggtccggcagaccgcgtacgtggtcgcccgggcgcacaagccggccgcgctcggccgg
gtactcgacgtcgaggcgccgaccgcggcgatcgtcttctgccgcagccgggaggaggtc
gaccggctcaccgagacgatgaacggtcgcggctaccgggccgaggcgctgcacggcggg
atgacccaggagcagcgggaccgggtgatgggccggctccgggcgggtaccgccgacctg
ctggtggcgaccgacgtggccgcccgggggctggacatcgagcagctcacccacgtggtg
aactacgacgtgccgtcggccccggagtcctacgtgcaccggatcggccgggtcggccgg
gccggccggcagggggtggcgatcaccctggccgagccgcgcgagcaccggatgctcaag
accatcgagcggaccaccgggcagcggatctcgatcgacaagattccgaccgtggccgac
ctgcggacccggcggctggagatgacccgggcggcgctgcacgagagcctgctggaggac
gacctcgacccgttccgggtgatcgtggagaccctcaccgacgagttcgacgtgatggag
gtggcgctggcggcggtcaagctggcgcacgagtcggccggaggcggcccggtcgacgag
gaggaggacatcccgcaggtggcgttccggtccgaccgggacggccgggcccgccgcgac
ggtggccgggacggcggccgggacgaccggcgcgccgcccggccccgctccggcgacatg
gcctgcctcttcatcggggtcggccggcgggccgggatccgcccgcaggatctggtcggg
gcgatcaccggcgagacggcggtcagcggccgggagatcggctcgatcgagatcgccgac
cggttctcgctggtcgaggtgccgaggtcggcggcgaacgaggtgatcacccggctccgg
cagagcaccatcaagggccgcaaggcgacggtacgccgggatcgcgaggtcggccgcgac
cagcgcgacggctga
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