Plantactinospora sp. BC1: C6361_10610
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Entry
C6361_10610 CDS
T05377
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
plab
Plantactinospora sp. BC1
Pathway
plab00040
Pentose and glucuronate interconversions
plab01100
Metabolic pathways
plab02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
C6361_10610
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C6361_10610
Enzymes [BR:
plab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
C6361_10610
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Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AVT29870
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Position
2511385..2512746
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AA seq
453 aa
AA seq
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MRSSRLTAAVVGGLLVVSGALVAAPATAGAHGADGLSWGARLLGRQALPAGDGWASAGPG
TTGGSAAAADQVHLVRTRGELVRALGGDNATNRNNATPKIIYVKGTIDGFESDDGRLLDC
ADLADPEYSLDAYLAAYDPATWGRVPPSGPLEQARVRSVANQTRQTQINVGPNTTIVGLR
GATLTGLTLMVDTANNVIVRNLTFADARDCFPAWSPTDGEAGAWNSQFDLMSVRRSENVW
VDHNTFTDGDNPDSGLPVYFGRPYMVHDGSLDITHTASRVTASYNRFVARDKVMLIGSSN
TVGPDVGRLDVTLHHNLFDGTRQRLPRVRFGRVDIYNNAYRLAGDGFSYAIGIGVQSAVH
AENNHFTLGTGITAADLLYDWDGTVLTERGNWVREGRKPARPVSLLAAYNAEHDPDLGGD
AGWTPTLRAGPVLPAPLVPLVVQALSGAGRLPV
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcgagcaggttgaccgcggccgtggtcggtggtcttctcgtggtctccggcgcc
ctggtggcggcgcccgcgacggccggcgcacacggtgcggacggactgtcctggggagcc
cgtctgctgggccggcaggcgttgccggccggtgacggctgggcctcggccggaccgggc
accaccggcgggtcggcggccgccgcggaccaggtgcacctggtccggacccgcggcgag
ctggtccgggcgctcggtggcgacaacgccaccaacaggaacaacgctactccgaagatc
atttatgtcaaggggacgatcgacgggttcgagtccgacgacgggcggctgctcgactgc
gccgacctggccgaccccgagtactcgctcgacgcgtacctggccgcgtacgacccggcg
acgtgggggcgggtgccgccgtccgggccgctggagcaggcccgggtccggtcggtggcg
aaccagacccgacagacccagatcaacgtcggtccgaacaccaccatcgtggggctgcgc
ggcgcgaccctcaccgggctgaccctgatggtggacaccgccaacaacgtgatcgtgcgg
aacctgaccttcgccgacgcccgggactgcttcccggcctggtcgccgacggacggggag
gccggagcctggaactcccagttcgacctgatgtcggtacgccgcagcgagaacgtctgg
gtcgaccacaacaccttcaccgacggcgacaacccggacagcgggctgccggtctatttc
ggacggccgtacatggtgcacgacgggtcgctcgacatcacgcacaccgccagccgggtg
accgcctcgtacaaccggttcgtggcccgggacaaggtgatgctgatcggctcctcgaac
accgtcggcccggacgtcggccggctcgacgtcacgctgcaccacaacctcttcgacggc
accaggcagcggctgccccgggtgcggttcggccgggtcgacatctacaacaacgcctac
cggctcgccggtgacggcttcagctatgcgatcgggatcggcgtgcagtccgccgtccac
gccgagaacaaccacttcaccctcggcaccggcatcaccgccgcggacctgctctacgac
tgggacggcacggtgctcaccgagcggggcaactgggtacgcgagggccggaagccggcc
cggccggtgagcctgctggccgcgtacaacgccgagcacgaccccgacctgggtggcgac
gccggatggacgccgacgctgcgggccggaccggtgctgcccgctcccctcgtaccgctg
gtggtgcaggccctttccggagccggccggctgccggtctga
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