Plantactinospora sp. BC1: C6361_20550
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Entry
C6361_20550 CDS
T05377
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plab
Plantactinospora sp. BC1
Pathway
plab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6361_20550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plab03021
]
C6361_20550
03019 Messenger RNA biogenesis [BR:
plab03019
]
C6361_20550
Transcription machinery [BR:
plab03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C6361_20550
Messenger RNA biogenesis [BR:
plab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C6361_20550
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
PIP5K
VWA_2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AVT31473
LinkDB
All DBs
Position
4696851..4698845
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AA seq
664 aa
AA seq
DB search
MSDTTDVTSDVSNVAGEATTGATRRRRTGTGLSAMLLPELQSLAASLGISGTARMRKGEL
IAAISERQAGATNSTGGGAPRPRAEVSAAAAPAREEVRAEVRDSADRPDGERRAAEQVPA
AAGGEGRTRTSRRSSRTAAATAEVETAAPTERNERNERPERAERGDRAERAERGDRAERT
DGAERTDGGERGDRADRGESRNGRDRNERGDRGERGESRNDRGQRSADRDRSTDRDRDRD
RDSDGDDDGEGGGRRSRRSRFRDRRRGRGERAENGESGGGREPQVNEDDVLVPVAGIIDV
LDNYAFVRTTGYLSGPNDVYVSMSQVKKYGLRRGDAVTGAVRAARDGEQRRDKYNPLVRL
DTINGMDPDEAKRRPEFYKLTPLYPQERLRLETEPHILTTRVIDLVTPIGKGQRALIMSP
PKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVVAATFDRPPQDH
TTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGGIDSTALYPPKR
FLGAARNIENGGSLTILATALVETGSVMDTVIFEEFKGTGNAELKLDRKIADKRVFPAID
IHTSGTRKEEILLAPEELAITHKLRKVLHSLDSQAALDLLLDRLKQSRTNIEFLMQIAKS
TPGE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgacgtgacgtcggatgtttccaacgtcgctggcgaagccaccacc
ggcgccacccgtcgtcggcggaccggcaccgggctgtcggcgatgctgctgccagagttg
cagagcctggccgcgtcgctcggcatctccggtacggcccggatgcgcaagggcgagctg
atcgccgccatctcggaacggcaggctggtgccaccaacagcacgggcggcggcgcgccg
cgcccgcgtgccgaggtgtcggccgctgccgcgccggctcgcgaagaggtccgggccgag
gtgcgggacagcgccgaccggccggacggtgagcgtcgggccgccgagcaggtgcccgcc
gccgctggcggcgagggtcggacccggacgtcccgccggtccagccggaccgctgccgcc
accgccgaggtggagaccgcggcgccgacggagcgcaacgagcggaacgagcgtccggag
cgggccgagcgcggtgaccgcgcggagcgggccgagcgcggtgaccgcgcggagcggacc
gacggtgccgagcggaccgacggtggcgagcgcggcgaccgcgcggaccggggcgagtcg
cgcaacggccgggaccgcaacgagcggggtgaccggggcgagcgtggcgagtcgcgcaac
gaccgtggacagcgctcggcggaccgggaccgttcgacggaccgggacagggatcgggac
cgggacagcgacggcgacgacgacggcgagggcggcggccggcgcagccggcggagccgc
ttccgtgaccggcgtcggggccggggcgagcgggcggagaacggcgagagcggcggcggc
cgggagcctcaggtcaacgaggacgacgtcctcgtaccggtggccggcatcatcgacgtg
ctcgacaactacgccttcgtccggaccaccggctacctctccggcccgaacgacgtctac
gtgtcgatgtcccaggtcaagaagtacggcctgcgccgcggtgacgcggtcaccggtgcg
gtacgcgcggcccgggacggcgagcagcggcgggacaagtacaacccgctggtccggctc
gacaccatcaacgggatggacccggacgaggcgaagcggcgtcccgagttctacaagttg
accccgctctacccgcaggagcggctccggttggagaccgagccgcacatcctgaccacc
cgggtcatcgacctggtgacgccgatcggcaagggtcagcgggcgctcatcatgtcgccg
ccgaaggccggtaagaccatggtgttgcaggcgatcgccaacgcgatcacccacaacaac
cccgagtgccacctgatggtcgtgctcgtcgacgagcggcccgaagaggtcaccgacatg
cagcgctcggtcaagggcgaggttgtcgcggccaccttcgaccgtccgccgcaggaccac
accacggtcgccgagctggcgatcgagcgggccaagcgcctggtcgagctgggccacgac
gtggtcgtactgctcgactcggtgacccggctcggccggtcgtacaacctggcggcgccg
gccagtggtcggatcatgtccggcggtatcgactccaccgcgctctacccgccgaagcgg
ttcctgggcgcggcgcggaacatcgagaacggcggctcgctgaccatcctcgccaccgcg
ctggtggagaccgggtccgtgatggacacggtcatcttcgaggagttcaagggcaccggc
aacgcggagctgaagctggaccggaagatcgccgacaagcgggtcttcccggccatcgac
atccacacctccggcacccgtaaggaggagatcctgctggccccggaggagttggccatc
acgcacaagctgcgcaaggtgctgcactcgctcgactcgcaggccgcgctggacctcctg
ctggaccggctcaagcagtcccggaccaacatcgagttcctgatgcagatcgcgaagtcg
acgccgggggagtaa
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