Plantactinospora sp. BC1: C6361_26540
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Entry
C6361_26540 CDS
T05377
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plab
Plantactinospora sp. BC1
Pathway
plab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6361_26540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plab03021
]
C6361_26540
03400 DNA repair and recombination proteins [BR:
plab03400
]
C6361_26540
Enzymes [BR:
plab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6361_26540
Transcription machinery [BR:
plab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6361_26540
DNA repair and recombination proteins [BR:
plab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6361_26540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVT32429
LinkDB
All DBs
Position
complement(6050914..6054801)
Genome browser
AA seq
1295 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFASYVVTSVDTEARHRDLATVENEILAEKRQAENSRDSEIEKRAAKLEAD
LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL
YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEADNLREIIRTGKGQRKIRALKRLKVVA
AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTPGEIGEGR
VFSSDAEARMAFDNGELHLQTPVKIRLRGVTEVDNGPGASRWTAPEEWVPGEPLTVETTL
GRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEAGFHWATWSG
VTIGMEDVIAPPRKRDILERYEKEAERIDKQYQRGLMTAEERRGELIEIWTKATNEVAKE
METALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKASYREGLSVLE
YFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPMQIATQLDGR
LVAHEHVETSVHARTLADDIKGPDGNLVAERGADINTILVDKIVGAGVDTVRVRSVLTCE
SKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL
PRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIVVPDDGSDEIVYDKISKRVPLQA
HDGDHVDVGQKLTKGTIDPHELLRILGPRAVQVHLTQEVQEVYRSQGVLIHDKHIEIIIR
QMLKRVTVIDSGATEFLPGVLVDRALFESENRRLVSEGGEPAAGRPVLMGITKASLATDS
WLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLIPAGTGISKYRNIRVEPTEEAK
AKVYSMTGYPETDYGFGPASGQAVPLDDFDFGSYR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagttgcggattggcctggccaccgccgacgacatc
cgtcagtggtcgcacggcgaggtcaagaagcctgaaacgatcaactaccgcaccctgaag
ccggaaaaggacgggctcttctgcgagaagatcttcggtccgcagcgggactgggagtgc
tactgcggtaagtacaagcgggttcggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaaggtgcggcgtgagcggatgggccacatcgagctggccgcgtcg
gtgacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggacctcgaaaagatcatctacttcgcgtcgtacgttgtcaccagcgtcgac
acggaggcgcggcaccgtgacctcgccacggtggagaacgagatcctcgccgagaagcgg
caggccgagaacagccgcgactcggagatcgagaagcgggccgccaagctcgaggccgac
ctggccgagctggaggccgagggtgccaaggccgacgtgcggcgcaaggtcaaggagggc
ggagagcgcgagatgcgccagatccgcgaccgggcgcagcgcgagatcgaccgcctcgac
gaggtgctggacaccttccgcaagctggagccgaagcagctcgtcaccgacgaactgctc
taccgcgagctgcgggaccggttcggcgagtacttcaccggtgggatgggcgcggaggcg
atcaaggcgctggtccagaacatggacctggacgccgaggccgacaacctccgcgagatc
atccgtaccggcaaggggcagcggaagatccgggcgctcaagcggctcaaggtcgtggcg
gcgttcctgaacacccgcaactcgccgctcgggatggtgctggactgcgtaccagtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacctcggacctg
aacgacctctaccgccgcgtcatcaaccggaacaaccggctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctcttcgacaacggtcgacgcggtcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtcggacatgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgggtcgactactccggtcgttccgtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcggcagcgg
ccggtcgtctgggacgtgctggaagaggtcatcggcgagcacccggtactgctgaaccgg
gcgccgaccctgcaccggctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcgatccagatccacccgctggtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtacacgtgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctc
tcgtcgaacaacatcctcaagccggccgacggcaagccggtcaccatgcccacccaggac
atggtcatcggcctctaccacctcacccacctcaccccgggtgagatcggcgagggtcgg
gtgttcagctcggacgccgaggcgcggatggcgttcgacaacggcgaactgcacctgcag
accccggtgaagatccggctgcgcggtgtgaccgaggtggacaacgggcccggcgcctcc
cggtggaccgctccggaggagtgggtaccgggtgagccgctgaccgtggagaccacgctg
gggcgggtgctcttcaacgagaccctgccgcagggctaccggttcgtgaactacgagatc
cgcaaggggcagctctccgcgatcgtcaacgatctcgccgagcggttcccgaaggtggcg
ctggccgcgacgctcgacgggctcaaggaggccggtttccactgggccacctggtccggc
gtgacgatcggcatggaggacgtcatcgcgccgccgcgcaagcgggacatcctggagcgg
tacgagaaggaagccgagcggatcgacaagcagtaccagcggggtctgatgaccgccgag
gaacgtcgcggcgaactcatcgagatctggaccaaggcgaccaacgaggtcgccaaggag
atggagactgcgctgccgcaggagaacccgctgtggaagatgatcaactcgggtgcccgc
ggtaacctgctccagctccgccagatcgccgcgatccgtggtctggtggccaacccgaag
ggcgagatcatcccgcggccgatcaaggccagctaccgggagggtctctccgtactggag
tacttcatctccacgcacggtgcccggaagggtctcgccgacacggcgctgcgtaccgcc
gactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatcatccgcgag
gaggactgcggcaccgaccgcgccatcccgatgcagatcgcgacccagctcgacggcagg
ctggtggcacacgagcacgtggagaccagcgtgcacgcccgtaccctcgccgacgacatc
aaggggccggacggcaacctggtcgccgagcggggtgcggacatcaacacgatcctggtc
gacaagatcgtgggtgccggggtggacaccgtacgggtccgcagcgtgctcacctgcgag
tccaagctcggcgtctgcggggcgtgctacggccgctcgctgccgacgggcaagaccgtg
gacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgagccgggcacgcag
ctcacgatgcgtaccttccacaccggtggtgtcgcgggtgaggacatcacccagggtctg
ccccgggtccaggagatcttcgaggcccgggtcccgaagggcaaggcgccgatcgccgac
accccgggccggatccggatcgaggacggcgagcggtcgcgcaagatcatcgtggtgccg
gacgacggcagcgacgagatcgtgtacgacaagatctccaagcgggtgccgctccaggca
cacgacggtgatcacgtcgacgtcggccagaagctgaccaagggcaccatcgacccgcac
gagctgctgcggatcctcggcccgcgggcggtccaggtccacctgacccaggaggtccag
gaggtctaccggtcgcagggtgtgctcatccacgacaagcacatcgagatcatcatccgc
cagatgctcaagcgggtgacggtgatcgactccggcgcgaccgagttcctgccgggtgtg
ctggtcgaccgggcgctcttcgagtcggagaaccgccgactcgtctccgagggcggcgag
cccgcggcgggccggccggtgctgatgggcatcaccaaggcctcgctggccacggactcg
tggctgtcggcggcgtccttccaggagaccacccgggtgctcaccgacgcggcgatccac
gcccggagcgactcgctgatcggtctcaaggagaacgtcatcatcggtaagctcatcccg
gccggtacgggcatcagcaagtaccgcaacatccgggtcgagccgaccgaggaggcgaag
gccaaggtctactcgatgaccggctacccggagaccgactacgggttcgggccggccagc
ggccaggctgtgccgctggacgacttcgacttcgggtcgtaccgctga
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