Plantactinospora sp. BC1: C6361_32390
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Entry
C6361_32390 CDS
T05377
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
plab
Plantactinospora sp. BC1
Pathway
plab00040
Pentose and glucuronate interconversions
plab01100
Metabolic pathways
plab02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
plab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
C6361_32390
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
C6361_32390
Enzymes [BR:
plab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
C6361_32390
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-ProteinID:
AVT33367
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Position
7372317..7373441
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AA seq
374 aa
AA seq
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MLESAFQHPRPPTSAPGTAGRTVHPRWRRPRPTRDPAAEVDHFRSEVSVSSTETTTSQRV
RRLTRTPLLAAATAAVLVTTSMVAMPTASAASFNMQGWATQCGGTTGGGNASPVTVTSGS
QLVSEMQASGARVIRVSGSLSISGMQKVAANKTIIGVGSNAAITGGGLNVASVSNVIIRN
INFRNWSDDAINVQYSTRVWIDHNSFSNGSDGAVDIKRASDCATVSWNRVFDHDKSFLLG
HSDDNASEDSGKLRVTYHHNWFDGSEQRHPRVRFGNPVHVFNNYYNNVGGYGVASTEGAG
VLVEGNYFENTDDPYHLGEASSGPGTLVARNNHFVNSGSGQAGGSVRSLPYSVSVDPAAN
VKSIVTGGAGTGRI
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaagcgctttccagcatccccgtcccccaacaagtgcgcccggaacggccggc
cgcaccgtccatcctcgctggcggcgcccgcgtcccacccgcgacccggccgccgaggtg
gatcacttccgctcggaggtatctgtgtccagcaccgaaaccaccacgtcccagcgcgta
cgacggctcacccggacgccactgctcgccgcagccaccgccgccgtactcgtcaccacc
tcgatggtcgcgatgcccaccgcgtcggccgcctcgttcaacatgcagggctgggcgacc
cagtgcggcggcaccaccggcggcggcaacgcctccccggtgacggtcaccagcggcagc
cagctggtcagcgagatgcaggccagcggcgcacgggtgatccgggtctccggcagcctg
tcgatcagcggcatgcagaaggtcgccgccaacaagaccatcatcggggtgggcagcaac
gccgccatcaccggtggcgggctcaacgtcgccagcgtcagcaacgtcatcatccggaac
atcaacttccggaactggagcgacgacgcgatcaacgtgcagtactcgacccgggtctgg
atcgaccacaacagcttcagcaacggctccgacggcgcggtcgacatcaagcgggcctcg
gactgcgccaccgtctcctggaaccgggtcttcgaccacgacaagtccttcctgctcggt
cactccgacgacaacgcgagcgaggacagcggcaagctgcgggtgacgtaccaccacaac
tggttcgacggctccgagcagcggcacccccgggtccggttcggcaacccggtgcacgtc
ttcaacaactactacaacaacgtcggcggctacggcgtcgcctccaccgagggcgccggt
gtgctcgtcgagggcaactacttcgagaacaccgacgacccgtaccacctcggcgaggcc
agctccggccccggcaccctggtcgcccggaacaaccacttcgtgaactccggcagtggc
caggccggcggcagcgtacggagcctcccgtacagcgtcagcgtcgacccggcggccaac
gtcaagtccatcgtcaccggcggcgccggcaccggccggatctga
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