Paraburkholderia largidicola: PPGU16_11150
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Entry
PPGU16_11150 CDS
T10364
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plad Paraburkholderia largidicola
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plad03019
]
PPGU16_11150 (hrpA)
Enzymes [BR:
plad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PPGU16_11150 (hrpA)
Messenger RNA biogenesis [BR:
plad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PPGU16_11150 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
NACHT
T2SSE
AAA_19
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BCF88048
UniProt:
A0A7I8BHW8
LinkDB
All DBs
Position
1:1271343..1275197
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AA seq
1284 aa
AA seq
DB search
MIVSGETGSGKTTQLPKICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFG
EVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLG
YLKEILPKRPDLKLIVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPVAEDS
PAVKSAEGNAGRERGDRPKTQRETDRDLMDAIVEAADELCREGPGDVLVFLPGEREIRDA
AEALRKQHPPHTEILPLFARLSAAEQERVFRPSNARRIVLATNVAETSLTVPGIRYVVDT
GLARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGICIRLYDEADFQSRVRFTDP
EILRSSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGR
ELARLPLDPRVGRMILGARDQQALREVLIIASALSVQDPRDRPIDAQEQADQAHRKFADE
RSEFLQWLKIWAWFEEAIAHKKSNRQLTDACKQNFLSHLRLREWRDVHSQLLTVVREHGW
RVNDSEATFEQIHLALLTGLLGNIGLKADDEPYYLGARSIKFYLWPGSALVKKAGKWVMA
AELVETSRLYARCIAKIEPEWIERVGAHLLKKSLSEPHWEKRAAQVSAFERAMLYGLPIY
HRRRVSFGKQDPARARELFIRGALVEGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLV
DDELIYAFYDQAVPNGIHTGAAFERWYRDEVKKSGQQEDKLRLLYLSRDDLMRHEAAGVT
TDLFPKRMTMAGVDMALTYHFEPGSPRDGVTLAVPLYALNQVDARRVEWLVPGMLKEKTQ
LLLKSLPQKLRRHVVPLPEYAAGFVERHSGPKFGAGGLLDTVIADIREQTQIATKQSDFK
LETLAPHLFMNFKVIDEHGRQLAMGRNLAQLRAELGGQAQQQFQKIASSAAGAALANAGS
GGGDAPAREATGGRNGGGARGASAVPHTPAAGEAAAAPATALYENLTTWNFGKLPELLEI
RRGGHTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLREPIKYLEKNLPG
LREMAMQFMPRGTQEELRDQLIDTALDRACLQDPLPDDDASFHARKDEGRSRLTLLAQEI
ARLGGQILGEYAAVVKKLAQAKPFAAAFADMQNQLEALIGKRFIVDTPYPQLTHFPRYLK
GIALRIDKLKADSARDARQFAEFQPLAQNYQRALAQRGGVPDARLVEFRWLLEELRVSLF
AQELRTPMPVSVKRLYKVWESMQR
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcagcggcgagacgggctcgggcaagacgacccagttgccgaaaatctgtctc
gcgctcggtcgcggactcggcgcgggcggtagcgggctgatcggccacacgcagccgcgc
cggatcgcggcttcggcgacgggccggcgcattgccgaggaactcggcacgccgttcggc
gaagtggtcggctacaaggtgcgtttcaccgataatctcgcgccgggcgcgtccgtcaaa
ctgatgacggacggcattctgctcgcggaaacgcagaccgatccgctgctgaaagcgtac
gacacgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgattttctgctcggc
tatctgaaagagattttgccgaagcgcccggatctgaagttgatcgtgacgtcggcgacc
atcgatgccgatcgcttcgcacgtcatttcggctccgaagaaaaacccgcgcccgtgatc
gaggtgagcggccggctgtatcccgtcgaggtccgctatcgtcccgtcgccgaagattcg
ccggcggtgaagtcggcggaagggaatgcgggccgggagcgtggcgatcgtccgaaaacg
cagcgggagaccgaccgcgatctgatggacgcgatcgtcgaagccgccgacgaactgtgc
cgcgaaggcccgggcgatgtgctcgtattcctgcccggcgagcgcgagattcgcgacgcg
gcggaagcgctgcgcaagcagcatccgccgcacacggagattttgccgctgttcgcgcgg
ctgtcggcggctgaacaggaacgcgtgttccgtccgtcgaacgcgcggcgcatcgtgctc
gccaccaacgtcgccgagacctcgctgacggtgccgggcatccgctatgtggtcgacacg
ggcctcgcccgcgtgaagcgctactcgtaccgcaacaaggtcgagcagctgcaggtcgag
tcgatttcgcaggcggcggctaaccagcgggcagggcgctgcggacgggtcgcggacggc
atctgcatccgtctctacgacgaagccgatttccagtcgcgcgtgcgcttcaccgacccg
gaaattctgcggtcgtcgctggcgtccgtcattctgcggatgaagtcgctgcatctgacg
gccatcgaaaccttcccgttcatcgaaccgccgcccgggcgcgcgattgccgacggctat
caactgctgaacgaactcggcgccgtcgacgacgacaacgcgctgacgccgctcggccgt
gaactcgcgcgcctgccgctcgatccgcgcgtcggccggatgattctcggcgcgcgcgac
cagcaggcgctgcgcgaagtgctgatcatcgcgagtgcgctgtccgtgcaggacccgcgc
gaccgtcccatcgacgcgcaggagcaggcagaccaggcgcatcgcaagttcgccgacgag
cgctcagagtttctgcagtggctgaagatctgggcgtggttcgaagaggccatcgcgcac
aagaagtcgaacaggcagctgaccgatgcatgcaagcagaacttcctgtcgcatctgcgt
ttgcgcgaatggcgcgacgtgcattcgcaactgctcacggtggtgcgcgagcacggctgg
cgcgtgaatgacagcgaagcgaccttcgagcagattcatctggcgctgctgacgggccta
ctcggcaatatcggtctgaaggccgacgacgagccctactatctcggcgcgcgcagcatc
aagttttatctgtggcccggctcggcgctcgtgaagaaggcaggcaagtgggtgatggcg
gcggaactcgtcgaaacgagccggctgtacgcccgctgcatcgcgaagatcgagccggaa
tggatcgagcgcgtcggcgcgcatctgttgaagaagtcgctctccgagccgcactgggaa
aagcgcgcggcgcaggtgtcggcattcgagcgcgcgatgctgtacggcttgcccatttat
caccggcggcgcgtcagtttcggcaagcaggacccggcgcgcgcgcgggagctgttcatc
cgcggcgcgctggttgaaggcgagttcgacacgaagctcgcgttttttgcgcacaaccgc
aagctgctcgccgatatcgaacagctcgaacacaagtcgcgccgccaggacgtactggtc
gacgacgaactgatctacgcgttctacgatcaggctgtgccgaacggcatccatacgggg
gccgcgttcgagcgctggtatcgcgacgaagtgaagaagagcgggcagcaggaagacaag
ctgcgcctgctgtatctgtcacgcgacgatctgatgcgccacgaggcggccggcgtcacg
accgacctgttcccgaagcggatgacgatggcgggcgtcgacatggcgctcacctatcac
ttcgagccgggctcgccgcgcgacggcgtgacgctcgccgtgccgctgtatgcgctgaat
caggtggatgcgcggcgcgtcgagtggctcgtgccgggcatgctgaaggaaaagacgcaa
ctgctgctcaagtccttgccgcagaagctgcgccgccacgtcgtgccgttgccggagtac
gcggcgggcttcgtcgagcggcacagcgggccgaaattcggcgcgggcggcctgctcgac
acggtgatcgccgatattcgcgagcagacgcagatcgcgacgaagcagtcggacttcaag
ctcgaaacgctcgcgccgcacctgttcatgaacttcaaggtgatcgacgagcacggccgg
cagctcgcgatgggccgcaatctcgcgcaactgcgcgcggagctgggcggccaggcgcaa
cagcagttccagaaaatcgcgtcgagcgcggcgggtgcggcgctcgcgaatgcgggctcg
ggcggcggcgatgctcccgcgcgtgaagcgacgggcggtaggaatggtggaggcgcgcgt
ggcgcctcagctgtgccgcacacgcccgctgccggcgaagcagcggctgctcccgcaacc
gccctctacgaaaacctgacgacgtggaacttcggcaagctccccgagctgctcgaaatc
cggcgcggcgggcacacgctgttcggctatccggcgctcgtcgatcgcggcacgcattgc
gacgtcgaagtgttcgattcgccggacgaggccgcgcgcatccatcgcgcgggtctgcgg
cgactgttcgcgctgcagttgcgcgagccgatcaaatacctcgaaaaaaacctgccgggc
ttgcgcgaaatggcgatgcagttcatgccgcgcggcacgcaggaagaactgcgcgatcaa
ctgatcgacacggcgctcgaccgcgcgtgcctgcaggacccgctgcccgacgacgacgcg
agcttccacgcgcgcaaggacgaaggccgcagccggctgacgttgctcgcgcaggagatt
gcccgccttggcggacagattcttggcgagtatgcggccgtcgtgaagaaactcgcgcag
gcgaagccgttcgccgcggcttttgccgacatgcagaaccagttggaagcgctgatcggc
aaacgctttatcgtcgatacgccgtacccgcagttgacgcatttcccgcgctatctgaag
ggcatcgcgctgcgcatcgacaaactgaaagcggactcggcacgcgacgcgcgccagttc
gcagagtttcagccgctcgcgcagaactaccagcgagcgctcgcgcagcgcggcggcgtg
ccggatgcccggctcgtcgagttccgctggctgctggaggaactgcgcgtgtcgctgttc
gcgcaggaactgcgtacgccgatgcccgtttccgtcaagcgtctctataaggtgtgggag
tcgatgcagcgttga
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