KEGG   Paraburkholderia largidicola: PPGU16_11910
Entry
PPGU16_11910      CDS       T10364                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
plad  Paraburkholderia largidicola
Pathway
plad02024  Quorum sensing
plad03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:plad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PPGU16_11910 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PPGU16_11910 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plad03019]
    PPGU16_11910 (hfq)
   03036 Chromosome and associated proteins [BR:plad03036]
    PPGU16_11910 (hfq)
Messenger RNA biogenesis [BR:plad03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PPGU16_11910 (hfq)
Chromosome and associated proteins [BR:plad03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PPGU16_11910 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCF88124
UniProt: A0A7I8BHE4
LinkDB
Position
1:1364897..1365133
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDSESS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgtaaagagcac
gtgccggtctcgatctatctggtcaacggcatcaagcttcaagggaacattgaatcgttc
gaccagtacgtcgtgttgctccggaatacggtaacccagatggtctacaagcacgctatc
tcgactgtcgtgcctgcccgtccggtgaatttccacccggattccgaatcatcctaa

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