Paraburkholderia largidicola: PPGU16_16330
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Entry
PPGU16_16330 CDS
T10364
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plad Paraburkholderia largidicola
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plad03009
]
PPGU16_16330 (rlmD)
Enzymes [BR:
plad01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PPGU16_16330 (rlmD)
Ribosome biogenesis [BR:
plad03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PPGU16_16330 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltransf_23
Methyltrans_SAM
TRM5-TYW2_MTfase
Cons_hypoth95
TRAM
MTS
Methyltransf_15
Methyltransf_11
PCMT
Methyltransf_32
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
BCF88566
UniProt:
A0A7I8BIS7
LinkDB
All DBs
Position
1:complement(1880332..1881819)
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AA seq
495 aa
AA seq
DB search
MSFVYNLVFGPTFTQSVRKSQVSETVPHIGKTRSSRKSKQAREDAAAGPFKAPELDIQSL
DMEARGVGRTVTEDGSPGKVIFVEGALPGERVTYSSYRKKPSFEQAQVVDILKESVIRTR
PQCKFFGICGGCSMQHLDVRAQIAVKQRVLEDNLMHLSKLRPETVFRPIHGPSWGYRYRA
RLTVRNVVKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSDMLVPLRHMVEALSIRDRMPQ
IELAVGSSVTALVLRVLEPINEADEQVLRDFADQHNVQFWLQPKGPDSVYPFYPLDAQLD
YTLPEYGIRMPFRPTDFTQVNHQINRVLVGRALRLLAPAKTDRVLDLFCGIGNFTLPLAR
ISREVVGIEGSEVLTSRALDNAKENGVDSHTSFASRNLFEVTADDIRALGHFDKYLIDPP
REGALAVSKALADIAQSGEGPLPKRIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMF
PHTSHVESIALFERD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgttcgtctacaatctcgtgtttggtcccacttttacacagtctgtcaggaagtcg
caggtgtccgaaactgtcccccacattggtaaaacgcgctcgtccaggaagagcaagcag
gcgcgcgaagacgctgccgctggcccgttcaaggcgcccgaactcgatattcagtcgctc
gacatggaagcgcgcggcgtcggccgcaccgtcacggaagacggctcgcccggcaaggtc
atcttcgtcgagggcgcgctgcccggcgaacgcgtcacctattcgagctaccggaaaaaa
ccgagcttcgaacaggcgcaggtcgtcgatatccttaaagagagcgtgatccgtacgcgc
ccgcagtgcaagttttttggcatctgcggcggctgttcgatgcagcatctcgacgtgcgc
gcgcagatcgccgtcaagcagcgcgtgctcgaagacaatctgatgcatctgtcgaagctg
cgcccggaaaccgtgttccggccgatccacggcccgtcgtggggctaccgctatcgcgcg
cgcctcaccgtgcgcaacgtcgtgaagaagggcggcgtgctggtcggtttccacgaaaag
aaaagcagctacgtcgccgacatgacgagctgcgaagtgctgccgccgcatgtgtccgac
atgctggtgccgctgcggcacatggtcgaagcgctgtcgatccgcgaccgcatgccgcag
atcgaactggccgtcggctcgtcggtgacggcgctcgtgctgcgcgttctggagcccatc
aacgaggccgacgaacaggtgctgcgcgatttcgccgatcagcacaacgtccagttctgg
ctccagccgaagggtccggactcggtctatccgttctatccgctcgatgcgcagctcgac
tacacgctgcccgaatacggcatccgcatgccgttccgccccaccgacttcacgcaggtc
aaccatcagatcaaccgtgtgctggtcggtcgtgcgctgcgcctgctggcgcccgcgaag
accgaccgtgtgctcgatctgttctgcggcatcggcaacttcacgctgccgctcgcgcgg
atctcgcgcgaagtggtcggtatcgaaggcagtgaggtgctgacctcgcgcgcgctcgac
aacgcgaaggaaaacggcgtcgacagccatacgtcgtttgcgagccgcaacctgttcgaa
gtcaccgccgacgacatccgcgcgctcggtcacttcgacaagtacctgatcgatccgccg
cgcgaaggcgcgctcgcggtgtcgaaggcgctggcggacatcgcgcagagcggcgaaggg
ccgttgccgaagcgcatcgtctacgtgtcgtgcaacccggcgacgctcgcgcgcgacgcg
ggcctgctcgtgcacgaagcgggctatcgcttgaagggtgcgggcgtcgtgaacatgttc
ccgcatacgtcgcacgtcgagtcgattgcgctcttcgagcgcgactga
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