Paraburkholderia largidicola: PPGU16_16500
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Entry
PPGU16_16500 CDS
T10364
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
plad Paraburkholderia largidicola
Pathway
plad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPGU16_16500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plad03021
]
PPGU16_16500 (rho)
03019 Messenger RNA biogenesis [BR:
plad03019
]
PPGU16_16500 (rho)
Transcription machinery [BR:
plad03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PPGU16_16500 (rho)
Messenger RNA biogenesis [BR:
plad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PPGU16_16500 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
BCF88583
UniProt:
A0A7I8BJI2
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All DBs
Position
1:1899851..1901068
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AA seq
405 aa
AA seq
DB search
MANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPETSYLAST
DDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKHKIMFENL
TPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVMLQHIAHAIK
QNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIEKAKRLVEM
KNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTII
GTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRREELLIKPEI
LQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDMMRRGGG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggccaatggtctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaactgatgttc
gccattctaaaaaagcgcgccaaaacgggcgaaacgatcttcggtgacggcaccctcgaa
gtgctgccagacggcttcggcttcctgcgctcgccggaaacctcgtatctcgccagcacg
gacgacatctacatcagcccgtcgcagatccgccgcttcaacctgcatacgggcgacacg
atcgaaggcgaagtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtc
gacaaggtcaacggccagccgccggaagcctcgaagcacaagatcatgttcgagaatctg
acgccgctgcacccgaacaaggtgctgctgctcgaacgtgaaatgcgtggcgaggaaaac
gtcacgggccgcatcatcgacatgatcgcgcccatcggcaagggccagcgcggtttgctc
gtcgcgtcgccgaagtccggcaagaccgtgatgcttcagcacatcgcccatgcgatcaag
cagaaccatccggacgtgatcctgttcgtgttgctgatcgacgagcgtcctgaagaagtg
acggaaatgcagcgttcggtggcaggcgaagtcattgcttcgacgttcgacgaaccggct
gcgcgtcacgtgcaggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtcgaaatg
aagaacgacgtggtgattctgctcgactcgatcacacgtctcgcgcgtgcgtacaacacg
gtcgtcccggcatcgggcaaggtgctgacgggcggtgtcgatgcgaacgcactgcagcgt
ccgaagcgcttctttggcgcggcccgtaacatcgaggaaggcggttcgctgaccatcatc
ggcacggcgctgatcgaaacgggcagccgcatggacgacgtgatctacgaagaattcaag
ggcacgggcaacatggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtctatccg
tccatcaacctgaacaagtccggcacgcgtcgcgaagaactgctcatcaagcccgagatc
ctgcaaaagatctgggtgctgcgcaagttcatccacgacatggacgaagtcgaggcaatg
gaattcctgctcgacaagatccgccagacgaagaacaacgccgagttcttcgacatgatg
cgtcgcggtggcggctaa
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