Paraburkholderia largidicola: PPGU16_22160
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Entry
PPGU16_22160 CDS
T10364
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plad Paraburkholderia largidicola
Pathway
plad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPGU16_22160 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plad03019
]
PPGU16_22160 (pnp)
03016 Transfer RNA biogenesis [BR:
plad03016
]
PPGU16_22160 (pnp)
Enzymes [BR:
plad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PPGU16_22160 (pnp)
Messenger RNA biogenesis [BR:
plad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PPGU16_22160 (pnp)
Transfer RNA biogenesis [BR:
plad03016
]
Prokaryotic type
tRNA degradation factors
PPGU16_22160 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0181
Motif
Other DBs
NCBI-ProteinID:
BCF89149
UniProt:
A0A7I8BLM0
LinkDB
All DBs
Position
1:complement(2546896..2549034)
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AA seq
712 aa
AA seq
DB search
MSLFNKVVKEFKWGQHTVRMETGEIARQASGAVLVDVEDTVVLATVVGAKTAKPGQDFFP
LTVDYIEKTYSAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVM
SINPEVPADIPALIGASAALAISGLPFNGPVGAARVAYINNEYVLNPTRSQVKESRLDLV
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQAAPK
NEALISRVNEIAGNELLSAYQTRDKQARSAKLKAVYAATQAKLEEEAAAAGTVAADKASV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRDRFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVA
CLPSAEEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEAGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTELSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITAEVEVGQVYEGTILKLLDFGAIVNLLPGKDGLLHISE
IANERIKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAQTEPTPQQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtttaacaaggtcgtcaaagaattcaagtggggccagcatacggtccgcatg
gaaacgggtgaaatcgcccgccaggcgagcggtgccgtgctggtcgacgtcgaagacacc
gtcgtgctggccactgtcgtcggcgcgaagacggcaaagccgggtcaggacttcttcccg
ctgaccgtcgattacatcgaaaaaacctactccgcaggcaagattcccggtggcttcttc
cgccgcgaaggccgtccgtcggaaggcgaaacgctgatttcgcgcctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtccaggtcgtcatccacgtgatg
tcgatcaacccggaagtgcccgctgacatccccgcgctgatcggcgcatcggcggcgctg
gccatctcgggcctgccgttcaacggccccgttggtgctgcgcgcgttgcgtacatcaac
aacgagtacgtgctgaacccgacccgctcgcaagtcaaggaatcgcgtctggacctcgtc
gtcgccggtacggagcgcgcggtgctgatggtcgaatccgaagcggatcaactgccggaa
gacgtgatgctgggcgctgtcgtgttcggtcacgagcagatgcaaacggcaatcgacgca
atccacgaactggtccgtgaaggcggcaagcccgagtgggactggcaagccgcgccaaag
aacgaagcgctgatctcgcgtgtcaacgaaatcgcgggcaacgaactgctgtcggcttat
cagacgcgcgacaagcaggctcgctcggcgaagctgaaggccgtctacgcagccacgcaa
gccaagctcgaagaagaagcagcggcagcgggcacggtagcagccgacaaggcgtcggtc
ggcaacgtgctgttcgacatcgaagcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgtatcgacggccgcgacacgcgcaccgttcgtccgatcgaaatccgcacgggcgtc
ctgccgcgtacccacggttcggcactcttcacgcgtggcgaaacgcaggcgctcgtcgtc
gcgacgctcggcacgaagggcgatgagcagatcatcgacgcgctcgaaggcgagtaccgc
gatcgcttcatgctccactacaacatgcccccgttcgcgacgggcgaaacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggccacggccgtctggcaaagcgcgcgctggtcgcg
tgcctgccgagcgccgaagagttcggctactcgatccgtgtcgtgtcggaaatcacggaa
tcgaacggttcgtcgtcgatggcttcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgttgcgggtatcgcaatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggcgggcacggaagctggcgtgacggcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacctcggctgtctcgggtgcgaacacggaactgtccgactacgcgccg
cgcatgatcaccatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgtgcgctgacggaagaaacgggcacgacgatcgacatttcggatgacggc
gtcgtcacgatcgcgagcacgagcagcgaaggcatggctgaggcgaagaagcgcatcgag
aacatcacggcagaagtcgaagtcggtcaggtctacgaaggcacgattctcaagctgctg
gacttcggcgcgatcgtcaacctgctgccgggcaaggatggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgactacctgaaggaaggccagcaagtgaag
gtcaaggtcatccagacggacgagaagggtcgtgtgcgtctgtcggcgaaggcgcttttg
aacgaagcagcacaaacggaaccgacgccgcagcagtaa
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