Paraburkholderia largidicola: PPGU16_22760
Help
Entry
PPGU16_22760 CDS
T10364
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plad Paraburkholderia largidicola
Pathway
plad03030
DNA replication
plad03430
Mismatch repair
plad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPGU16_22760 (dnaE)
03430 Mismatch repair
PPGU16_22760 (dnaE)
03440 Homologous recombination
PPGU16_22760 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plad03032
]
PPGU16_22760 (dnaE)
03400 DNA repair and recombination proteins [BR:
plad03400
]
PPGU16_22760 (dnaE)
Enzymes [BR:
plad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPGU16_22760 (dnaE)
DNA replication proteins [BR:
plad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPGU16_22760 (dnaE)
DNA repair and recombination proteins [BR:
plad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPGU16_22760 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
BCF89209
UniProt:
A0A7I8BLS4
LinkDB
All DBs
Position
1:complement(2607087..2610647)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDVVDSAAKDGQGALALTDLGNAFGLVRFYQEARGK
GVKPIAGCDVWITNPDDRDKPSRLLLLVKNKTGYLNLCELLSKAWLTNQYRGRAEVETAW
LESGLAEGLLALSGAQHGDVGLALAAGNEEAARRNAQRWATIFPNGFYIELQRGGQPGAE
AYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDMLANPRRQKRFTTDQY
FRTQAEMVEMFADIPSAVANTIEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLERRLEQLFPEQTERDAQRETYYARLDFECGTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPASFS
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREV
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAAKNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPAEFMAA
NMSLAMDDTDKVKILFEDCIANKMAVLPPDINMSAYRFEPVAEADGKRSRTIRYGLGAIK
GSGQNAIEEILRAREEGKFVDLFDFCNRIDRRIVNRRTIEALIRAGAFDSLHENRAQLIA
SVSLAMEAADQASANAMQAGLFDMGDAPSQGHELIDEPAWPEKRRLQEEKTALGFYLSGH
LFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIVSLRTQMTQRGKMLIALLDDGTGQCEVT
VFNEQFEAHKQLFKEDELLVVQGQARNDAFTGGIRFTVDTPMDLGRARTRYAQAVKVQMN
GNANALVLRSVLEAYRAKPEDAEVAAPAPAARGGGRGGFGGNGDSGGRGQRPSAPMPNGL
AVQIVYRSDNAEGEVRLGDAWRVKPTDELLAALRSEFSGSAIEIVY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgattgccgatggc
atcgtgcgtatcgacgacgtcgtcgattccgctgccaaagacggtcagggcgcgctcgcg
ctcaccgacctcggcaatgcattcggtctcgtccgtttctatcaggaagcccgtggcaaa
ggggtcaaacccattgccggctgcgacgtctggatcacgaatcccgacgaccgcgacaag
ccatcgcggcttctactgctggtcaagaacaagaccggctatctgaatctttgcgaactg
ctgtcgaaggcgtggctgacgaaccagtatcgcgggcgcgcggaagtggaaacggcgtgg
ctcgaaagcgggctcgccgaagggctgctcgcgctgtcgggcgcgcagcacggcgatgtt
ggtctggcgctcgcggcgggcaacgaagaagccgcgaggcgcaacgcgcagcgctgggcg
acgatcttcccgaacggtttctatatcgagctgcagcgcggcggtcagcccggtgcggag
gcgtatgtgcagcaggcggtcgcgctcgcggcgtcgctgaaactacccgtggtcgccacg
catccgctgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgcgtgtgtatt
tcggaaggcgacatgctcgcgaatccgcgtcgccagaagcgcttcacgacggaccagtat
ttccgcacgcaagccgagatggtcgagatgttcgcggacattccgtcggccgtcgcgaac
acgattgaaatcgcgaagcgctgcaatctgacgctcgaactcggcaagcccaaactgccg
ctgttcccgacgcccgacggcatgtcgctcgacgactatctggtgcaattgtcgaaggaa
ggcctggagaggcgtctcgagcaactgttcccggagcagaccgaacgcgacgcgcagcgc
gaaacgtactacgcgcgtctcgacttcgaatgcggcacgatcatcaagatgggcttcccc
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggtgtcccggta
gggccgggccggggctcgggcgcgggctcgctggtcgcgtacgcgctcggcattaccgac
ctcgatccgctgcgctacaacctgctgttcgaacgttttctgaatcctgagcgggtgtcg
atgcccgacttcgacatcgacttctgtcagcacggccgcgatcgcgtgatccagtacgtg
aaggaaaagtacggtgcagatgccgtctctcagatcgcgacgttcggcacgatggccgcg
aaggcggccgtgcgcgatatcggccgcgtgctcgatctcggctacatgttcacggacggc
gtcgccaagctgattccgttcaagcccggcaagcacgtcaccatcgccgacgcgatgaag
gaagaaccgctcttgcaggagcgcttcgacaacgaagacgaagtgcatcagctgctggaa
ctcgcgcagcgcgtggaaggcttgacgcgtaacgtcggcatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgacggatttctgtccgctttacacgcagggcgatgaaagcggc
gtcgtgagccagtacgacaaggacgacgtcgaggccgtcggcctcgtgaagttcgacttc
ttgggtctgaccacgctgaccattctcgactgggccgagcgctacattcgccgtctcgat
ccgtcgaaggaaaactggtcgcttgcgcaggtgccgctcgacgaccccgcgtcgttctcg
atcctcaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggcatgcaaggc
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtggcgttgtat
cgtccgggcccgatggatctgattccgagcttctgtgcgcgtaagcacggccgcgaagtg
gtcgagtatccggatccgcgcgtcgaacctgttctgaaagagacctacggcatcatggtc
taccaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctgggcggcgcc
gacttgctgcgtcgcgcgatgggcaagaaaaagcccgaggaaatggcgaagcaccgcgag
atcttcgcggaaggcgccgcgaagaacggtctgacacgcgagaaggcggacgaaaccttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggctgcgtatgcg
ctgctcgcgtaccacaccgcgtggctcaaggcgcaccatcccgccgaattcatggcggcc
aatatgtcgctcgcgatggacgacacggacaaggtcaagatcctgttcgaagactgcatc
gcgaacaagatggccgtgctgccgcccgacatcaacatgtccgcgtaccgcttcgagcct
gtcgcggaagccgacggcaagcgttcgcgcacgatccgctacggtcttggcgcgatcaag
ggcagcggtcagaacgcgatcgaagaaatcctgcgcgcgcgcgaagaaggcaagttcgtc
gatctgttcgatttctgcaaccggatcgaccgccgcatcgtcaaccgccgcacgatcgaa
gcactgattcgcgcaggcgcgttcgattccttgcacgagaaccgcgcgcaactgatcgcg
tccgtgtcgctcgccatggaagccgcggatcaggcgagcgccaacgcgatgcaggcgggc
ctgttcgacatgggcgatgcgccgtcgcagggtcatgaactgatcgacgaacccgcgtgg
ccggaaaagcgccgtttgcaggaagagaagacggcgctcggtttctacctgtcgggtcat
ctgttcgacgcctacaaggacgaagtgcgtcgcttcgttcgtcagaagatcggcgaattg
aaggaagggcgcgacaagctggtggcgggcgtgatcgtgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggcacgggccagtgcgaagtgact
gtcttcaatgagcaattcgaggcgcacaagcagttgttcaaggaagacgaactgctcgtc
gtgcaaggccaggcgcgtaacgatgcgttcacgggcggcattcgtttcaccgtcgatacg
ccgatggaccttggccgcgcacgcacgcgttacgcgcaggcggtgaaggtgcagatgaac
ggcaatgcgaatgcgctcgtgttgcgctccgtgctcgaagcctatcgtgcgaagccggaa
gacgcggaagtcgcagcgccggcgcctgccgcgcgcggcggcggccgtggcggcttcggc
ggcaacggcgattcgggcgggcgcgggcagcggccatccgcgccgatgccgaacggcctc
gccgtgcagatcgtctatcgcagcgacaacgcggaaggcgaggtgcggctcggcgatgca
tggcgcgtgaagccaacggacgaactgctcgccgcgttgcgcagcgagttttcaggcagc
gcgatcgagatcgtgtactga
DBGET
integrated database retrieval system
