Paraburkholderia largidicola: PPGU16_45310
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Entry
PPGU16_45310 CDS
T10364
Symbol
rpoD_1
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plad Paraburkholderia largidicola
Pathway
plad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PPGU16_45310 (rpoD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plad03021
]
PPGU16_45310 (rpoD_1)
Transcription machinery [BR:
plad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPGU16_45310 (rpoD_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF7853
Motif
Other DBs
NCBI-ProteinID:
BCF91464
UniProt:
A0A7I8BS12
LinkDB
All DBs
Position
2:complement(1409978..1412023)
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AA seq
681 aa
AA seq
DB search
MTKKLNEVSVDDDASPSEEAAATPAAGKVEKVKARDRRAKEKALLKDAFASSQPGTVEEL
EERRSKLRALIKLGKERGFLTYGEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPDA
ETLLLNDNAPNASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDANAEDTDGFSE
QEAEAIENEEEEEEEADEEEEEDDDGAAQATANAAQLEELKRMSLEKFAMISEWFDKMRR
AFEKEGYKSKSYLKAQETIQEELMMIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVD
KCGMPRAEFIARFPGNETDLEWADKIVGENHAYSAILSRNVPAIREQQQRLLDLQARVVL
PLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE
TGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPSD
AALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSDKLKSFLEGN
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaacgaagtatccgtcgatgacgacgcatccccgagcgaagaagca
gccgccacacccgctgcgggcaaggtcgaaaaggtcaaggcacgcgaccgccgcgcaaag
gagaaggcgctgctcaaggacgcgttcgcgtcttcgcagcccggcaccgtcgaggagctc
gaagagcgccgctcgaagctgcgcgcgctgatcaagctcggcaaggagcgtggcttcctg
acctatggcgagatcaacgaccacctcccggacaacttcacggaaaccgaggcgatcgaa
ggcatcatcagcacgttcaacgacatgggtgtcgccgtctacgaacaggctcccgatgcc
gaaacgctgctgctgaacgacaacgcgcccaacgcttcgtcggacgacgaagtggaagag
gaagccgaagtcgcgctgtccactgtcgattccgaattcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggtacggtcgagctgctcacgcgcgaaggcgaaatcgaa
atcgccaagcgcatcgaagacggcctgaagcacatggtgatggccatctccgcctgcccg
accacgatcgccgacattctcgcgatggccgagcgcgtcgcgaatgaagagatccgcatc
gacgaactggtggacggcctgatcgacgcgaacgccgaagataccgacggcttctccgaa
caggaagccgaagcgatcgagaacgaggaagaagaagaggaagaggcggacgaggaagaa
gaggaagacgacgatggcgccgcgcaagcgacggccaacgccgcccagctcgaagaactg
aagcgcatgtcgctcgaaaaattcgcgatgatcagcgaatggttcgacaagatgcgccgc
gcgttcgaaaaggaaggctacaagtcgaagtcctacctgaaggcgcaggaaaccattcag
gaagagctgatgatgatccgcttcaccgcgcgtacggtcgagcggctgtgcgacacgctg
cgtgcgcaggtggacgaagtgcgtcaggtcgagcgtcagatcctgcacaccgtggtcgac
aagtgcggcatgccgcgtgccgagttcatcgcgcgttttccgggcaatgaaacggacctc
gaatgggccgacaagatcgtcggcgagaatcacgcgtacagcgcgatcctgtcgcgtaac
gtaccggccatccgcgagcagcagcaacgtctgctcgacttgcaggcgcgcgtcgtgctg
ccgctgaaggacctgaaggaaaccaaccgtcagatggcggcgggcgaactgaaggcgcgt
caggcgaagcgcgaaatgaccgaggcgaacctgcgtctcgtgatctcgattgcgaagaag
tacacgaaccgtggcctgcaattcctggatctgattcaggaaggcaacatcgggctgatg
aaggccgtggacaagttcgaatatcgccgcggctacaagttctcgacctacgcgacgtgg
tggatccgtcaggccatcacgcgttcgatcgcggaccaggcgcgcaccattcgtatcccg
gttcacatgatcgagacgatcaacaagatgaaccgcatctcgcgtcagattctgcaggaa
accggtctcgagccggatcccgcgacgctggccgagaagatggagatgccggaagacaag
atccgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatcggcgac
gacgacgattcccatctgggcgacttcatcgaggacacgaacacggttgcgccgtcggac
gccgcgctgcacgccagcatgcgcgatgtcgtgaaggacgtgctcgattcgctgacgccg
cgcgaagcgaaggtgctgcgcatgcgtttcggtatcgaaatgagcacggaccacacgctc
gaagaagtgggcaagcagttcgacgtgacgcgtgagcggatccgccagatcgaggcaaag
gcgctgcgcaagctgcgtcacccgagccgctcggacaagctgaagtcgttcctcgaagga
aactga
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