Paraburkholderia largidicola: PPGU16_54030
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Entry
PPGU16_54030 CDS
T10364
Symbol
rpoD_2
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plad Paraburkholderia largidicola
Pathway
plad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PPGU16_54030 (rpoD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plad03021
]
PPGU16_54030 (rpoD_2)
Transcription machinery [BR:
plad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPGU16_54030 (rpoD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
FtsA
Exonuc_VII_L
MitMem_reg
Motif
Other DBs
NCBI-ProteinID:
BCF92336
UniProt:
A0A7I8BU45
LinkDB
All DBs
Position
2:complement(2387779..2389779)
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AA seq
666 aa
AA seq
DB search
MAKLDRDNSQFETTTASKAPKRAAKAKAQPAAAPQDAALLESLAEERQRQMRALIALGRE
RGYLTHADINDHLPDNFTETAAMETIVSTFGEMGVSVYETAPDAETLLLNDGPSAAASDD
QADEEAEVALSTVDSEFGRTTDPVRMYMREMGASELLTRAGEIEIAKRIEGGLQDMVQAI
AMCPSIISTILADVDRVVAGEIRIDELVDGISDTSEAAELNEEAAEAAAEEELEASASDE
DSDDEDGDLSDDGGEKANAARLEQLTADSLAIFQRVRDLFASVPDMPVTDKRRATAIANL
RESIQQELTPIRFTAKTIDRLCAEVQAQVAQVRAIERNILQIAVDRCDMPREAFVESFPG
NETDLDWTMRIAAKSKSYGPALERHLPAIQSEQQKLVDIEASIALPLQQLKQINKQLGSA
EGKMRQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFS
TYATWWVRQAITRAIADQARTIRVPVHMIESINKLNRIQREIVQQTGQEPHPSVLAERMD
MPEAKIRSILKIAKNPASLDSPVGEDADTTLGDMIEDTSATSPADAAVHANMRRAIDEAL
DALTPREAKVLRMRYGIDTASELTLEEVGRQFDVTRERIRQIEGKAIRKLNHPSRADKLR
PFLERS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaagcttgaccgggacaactcccagttcgaaaccaccaccgcatcgaaagcgcct
aagcgcgcagcaaaagcgaaggcgcaacccgccgccgcgccgcaagatgcggccttgctg
gaatccctcgctgaagagcgacaacgtcagatgcgcgcgttgatcgcgctcggccgcgag
cgcggctatttgacgcacgccgacatcaacgaccacttgcccgacaatttcaccgaaacg
gccgcgatggaaaccatcgtcagcacgttcggcgaaatgggcgtgtccgtgtacgaaacg
gcgcccgacgcggaaacgctgctgctgaacgacggcccgtcggctgccgcatcggacgat
caggccgatgaggaagcggaagtcgcgctgtccacggtcgactccgagttcggccgcacg
accgacccggtccgcatgtatatgcgcgaaatgggcgcgagcgagctgctcacgcgcgcc
ggcgaaatcgaaatcgccaagcgcatcgaaggcggcctgcaggacatggtgcaagccatc
gcgatgtgcccgtccatcatctcgacgatcctcgccgacgtggaccgcgtcgtcgcgggt
gaaatccgcatcgacgaactggtcgacggcatcagcgacacgagcgaagccgccgaactc
aacgaggaagcagccgaagccgctgccgaagaagagctggaagcgagcgcgtcggacgaa
gattcggacgacgaagacggcgacctgtcggacgacggcggcgaaaaagccaacgccgcg
cgcctcgagcaactgacggccgacagcctcgcgatcttccagcgcgtgcgcgacctcttc
gccagcgtgcccgacatgcccgtcacggacaagcgccgggcaacggctatcgcgaacctg
cgcgagtcgatccagcaggaactgacgccgatccgcttcacggccaagaccatcgaccgc
ctgtgcgcggaagtgcaggcgcaggtcgcgcaggttcgcgcgatcgaacgcaacatcctg
cagatcgccgtggatcgctgcgacatgccgcgcgaagcgttcgtcgagtcgttcccgggc
aacgagaccgatctcgactggaccatgcggatcgccgcgaagtcgaagtcgtacggtccg
gcgctcgagcgtcacctgcccgccatccagtcggagcagcagaagctggtcgacatcgaa
gcgtcgatcgcgctgccgctgcagcaactcaagcagatcaacaagcagctcggctccgca
gaaggcaagatgcgccaggccaagcgcgagatgatcgaagcgaacctgcgtctcgtcatt
tcgatcgccaagaagtatgtgaatcgcggcatgcacttcctcgacctgatccaggaaggc
aacatcggcctgatgaaggcagtggacaagttcgaataccgtcgcggctggaagttctcg
acgtacgcaacgtggtgggtccgtcaggccatcacgcgcgcgatcgccgaccaggcgcgc
accattcgtgtgccggttcacatgatcgaatcgatcaacaagctgaaccgcatccagcgc
gagatcgtccagcagacgggtcaggagccgcatccgtccgtgctggccgagcgcatggac
atgcccgaggcgaagatccgcagcatcctgaagatcgcgaagaatccggcctcgctggat
tcaccggtgggcgaagatgccgacacgacgctcggcgacatgatcgaagacacgtccgcg
acgtcgcccgccgacgccgccgtgcacgcgaacatgcgccgcgcgatcgacgaagcgctc
gacgccctcacgccgcgtgaagcgaaggtgctgcgcatgcgctacggcatcgacacggcg
tcggaactgacgctcgaagaagtgggccgccagttcgacgtgacgcgcgagcgtatccgc
cagatcgaaggcaaggcgatccgcaagctcaatcacccgagccgtgcagacaagctgcgc
ccgttcctcgaacgcagctga
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