Paraburkholderia largidicola: PPGU16_78760
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Entry
PPGU16_78760 CDS
T10364
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plad Paraburkholderia largidicola
Pathway
plad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPGU16_78760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plad03019
]
PPGU16_78760
03400 DNA repair and recombination proteins [BR:
plad03400
]
PPGU16_78760
Enzymes [BR:
plad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPGU16_78760
Messenger RNA biogenesis [BR:
plad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPGU16_78760
DNA repair and recombination proteins [BR:
plad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPGU16_78760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_20
RPA_C
TrmB
Motif
Other DBs
NCBI-ProteinID:
BCF94809
UniProt:
A0A7I8C2N6
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All DBs
Position
PPGU16_p2:complement(98782..100548)
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AA seq
588 aa
AA seq
DB search
MRRTLSDVFGLESLRPGQREIIESVMHGRDTLAIMPTGAGKSLCYQLPALHLNGLTLVVS
PLIALMKDQRDKLLAANVEALQINSTLNAAEERQAYEELKTASRAIVFVTPEQLTKPALL
DALRGRDDPYARGRSARRGEVRRVSLIVVDEAHCISQWGHDFRPAFLQIAEAASSIGSPP
VLALTATATTAVVKDIVRTLGMRDPRVLHKGVYRSNLHYSVLQVSVAGGKGRASARSAQA
KLTALRTLLESRSDAGIIYTATVREAERLAAAIREWGVPAALYHGRISSRQRHDAQDGFM
RGDVRVMVATNAFGMGIDKADIRFVVHDQMPGSIGAYYQETGRAGRDGEAADCVLLFDLN
DRRIQQFLQLGRYPGRELIERVREALRKHDGVSTTGVSVDELARILGDVGRNKLQVALKI
LLDAGLVRRNRARRYLLRDGAPGGDALSASLHRYDEQAKRDRDALQQMIDYAQTGRCRWN
TILEHFGYGDELEQCGTCDNCRNPPHVEPVREPVLEGRMMDAARETPHAQRSFVRGQSVR
VRKFGIGQVTFATMDQVAVLFSDGTTRTFLARFVRAADATHNAADSRR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggacactgagcgacgtcttcggtctcgaatctctgcggccaggtcagcgcgag
atcatcgagagcgtgatgcacgggcgcgacactttggccatcatgccgacgggcgccggt
aaatcgctttgctaccagttgccggcgctgcacctgaacggcctgacgctggtcgtgtcg
ccgttgatcgcgctgatgaaagatcaacgcgacaagcttctcgcagcgaacgtcgaggca
ctgcagatcaacagcacgctaaacgccgccgaggagcggcaagcgtacgaagagctaaaa
acggcatcgcgtgcaatcgtcttcgtgacgcccgaacaactcaccaagccagcactgctg
gacgcgctccgcggacgggatgacccctacgcgcggggacgcagtgcacggcgtggcgag
gtacggcgggtaagtctgattgtggttgacgaagcccactgcatttcgcagtggggacat
gatttcagacccgcgttcctgcagatcgccgaagccgcgagcagtattggaagtccgccc
gtcctcgcgctcaccgccacggcgacgacggcggtcgtcaaagatatcgtacgcacgctc
ggcatgcgcgatccacgcgtgctgcacaaaggcgtctaccggtcgaacttgcattacagc
gtccttcaggtgtcggtcgctggcggcaaaggacgcgcgtcagcgcgttctgcacaggcc
aagctcactgcgcttcggaccttgctcgaatcgcgcagcgacgccggtattatctatacg
gcaacggtgcgcgaagcggaacgtctggcggcagcgattcgcgaatggggggtgcctgcc
gcgctctaccacggacggatcagttcccggcagcggcacgacgcgcaggacggcttcatg
cgtggcgacgtgcgcgtgatggttgcgaccaacgcattcggcatgggcatcgacaaggct
gacatacgctttgtcgtgcatgaccagatgccagggagcatcggtgcgtactatcaggag
accgggcgagccggacgcgacggcgaagcagccgattgcgtgttgctgttcgatctcaac
gacaggcgtatccagcaatttctgcagctcggtcgctaccccgggcgtgaactcatcgag
cgcgtgcgcgaagcgctgcgaaagcatgacggcgtatcgacgacgggcgtgagtgtggac
gaactcgcacgcattctcggcgatgtcgggcgaaacaaactccaggttgcgctcaagata
ctgctcgacgccgggctcgtgcgtcgcaatcgcgcgcgccgctatctgctgcgcgatggc
gctcctggcggcgatgccctctcagcatcgctccaccgctacgacgaacaggcgaagcgc
gatcgcgacgcacttcaacagatgatcgactatgcgcaaacgggccgctgccgctggaac
acaatcctcgagcatttcggttatggcgacgaactcgaacagtgcggcacgtgcgacaac
tgccgtaacccgccgcatgtcgaacctgtccgcgagcccgttctcgaaggccggatgatg
gatgccgcgcgcgagacgcctcacgcgcagcgcagctttgtgcgtggccagtccgtgcga
gtgcgtaagtttggcatcggccaggtcacctttgcgacgatggatcaggttgccgtactg
ttttctgatgggacgacgcgcacgttcctcgcgcgattcgtcagggctgcggacgcgacg
cacaacgcagccgatagccgacgctga
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