Plasmodium sp. gorilla clade G2: 39742285
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Entry
39742285 CDS
T10353
Symbol
PADL01_1103900
Name
(RefSeq) tRNA-splicing ligase RtcB, putative
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plag Plasmodium sp. gorilla clade G2
Brite
KEGG Orthology (KO) [BR:
plag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plag03016
]
39742285 (PADL01_1103900)
Enzymes [BR:
plag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
39742285 (PADL01_1103900)
Transfer RNA biogenesis [BR:
plag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
39742285 (PADL01_1103900)
Prokaryotic type
tRNA splicing ligases
39742285 (PADL01_1103900)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ATLF
Motif
Other DBs
NCBI-GeneID:
39742285
NCBI-ProteinID:
XP_028538764
PlasmoDB:
PADL01_1103900
LinkDB
All DBs
Position
11:165962..167482
Genome browser
AA seq
506 aa
AA seq
DB search
MRGPPKRDISSYIEKTNEKNLYKIKKGLVNDMNVEGHIYVNEKLKMLLDEEIATYELNKN
STFLPAVMQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFDMNDEKAVVSPGGVGFD
INCGVRLIRTNLYYEDIKPKQEELTQLLFNHIPVGVGSQGFILCNQDNLDDALCLGMDWC
VKEGYSWIEDKLNCEDNGRSLYADSNYVSIRAKKRGITQMGTLGAGNHYAEVQIVDEIYD
KKSAKLMGIEKRNQVCIMIHSGSRGLGHQIATDALIEMEKSMNKYKINVIDKQLACTPIH
SKEGQNYLKAMGSACNFAWINRSSMTFLARQTFSKIFNQSPDDLDMHVIYDVSHNIAKIE
EHYIDGKIKKLLVHRKGSTRAFPPFHPLVSLDYQYCGQPILIGGTMGTYSYVLTGNEKAM
QATFGSTCHGAGRALSRNKSRNTLSYVDVLHKLKEQNISIRVASPKLIMEEAPESYKNVS
DVVQTCHDAGISNKCFRLKPVAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaggggacccccaaaacgtgatatttctagctatatcgaaaaaacgaatgaaaagaat
ttatataaaataaaaaaaggattggttaatgatatgaatgtagaaggacatatatatgta
aatgagaaattaaaaatgttattagatgaagaaatagcaacatatgaattaaataagaat
tcaacatttcttccagcagtaatgcaaattgcgaatgtatctacattaccaggtatagta
aaagcatctatagcattgccagatgtacatgcaggttatgggttctctataggaaatgtg
gcagcatttgatatgaatgatgagaaagcagttgtatctccaggaggtgtaggatttgat
ataaattgtggtgttcgtttaatacgtacaaatttatattatgaggacataaaacctaaa
caagaagaattaacacaattattatttaatcatattcctgtaggtgtaggatcacaagga
tttattttatgtaatcaagataatttagatgatgctttatgtttaggaatggattggtgt
gtgaaagaaggatattcatggattgaagataaattaaattgtgaagataatggtagaagt
ctttatgctgatagtaattatgtttctataagagcaaagaaaagaggaattacacaaatg
ggaaccttaggtgcaggaaatcattatgctgaagtccaaattgtagatgaaatttatgat
aaaaaaagtgcaaaattaatgggtattgaaaaaagaaatcaagtatgtattatgatacat
tcaggtagtagaggtctagggcatcaaatagctacagatgcattaatagagatggaaaaa
agtatgaataaatataaaattaatgttatagataaacaacttgcttgtacacctatacat
tcaaaagaaggacaaaattatttaaaagctatgggttctgcttgtaattttgcatggatt
aatagatcatctatgacatttttagctagacaaactttttcaaaaatttttaatcaatca
ccagatgatctagatatgcatgtaatatatgatgtatcacataatatagccaaaattgaa
gaacattatatagatggaaaaattaaaaaattattagtacacagaaaaggatctacaaga
gcattcccaccttttcatccacttgtatcattagattatcaatattgtggtcaaccaata
ttaataggaggtaccatgggtacctattcttatgtcttaacaggaaatgaaaaagcaatg
caagcaacctttggttccacatgtcatggagctggtagagcattaagtagaaataaaagt
agaaatactttaagttatgtagatgtactgcataaattaaaagaacaaaatatttctata
cgtgttgcatctcctaaattaattatggaagaagcaccagaatcatataaaaatgtttct
gatgttgttcaaacgtgtcacgatgcagggatatcaaataaatgttttcgtctaaaacct
gtagccgtcataaaaggataa
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