Plasmodium sp. gorilla clade G2: 39742298
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Entry
39742298 CDS
T10353
Symbol
PADL01_1105200
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4, putative
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
plag Plasmodium sp. gorilla clade G2
Pathway
plag03018
RNA degradation
plag03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plag00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
39742298 (PADL01_1105200)
09123 Folding, sorting and degradation
03018 RNA degradation
39742298 (PADL01_1105200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plag03019
]
39742298 (PADL01_1105200)
03041 Spliceosome [BR:
plag03041
]
39742298 (PADL01_1105200)
Messenger RNA biogenesis [BR:
plag03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
39742298 (PADL01_1105200)
mRNA degradation factors
5'-3' decay
Lsm complex
39742298 (PADL01_1105200)
Spliceosome [BR:
plag03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
39742298 (PADL01_1105200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7957
SM-ATX
Motif
Other DBs
NCBI-GeneID:
39742298
NCBI-ProteinID:
XP_028538777
PlasmoDB:
PADL01_1105200
LinkDB
All DBs
Position
11:208477..209313
Genome browser
AA seq
126 aa
AA seq
DB search
MVFPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISEC
YVRGNSIKYIRVQDQAIEQAIEETAEQKARNMGRGRGGRGRGRGGMNRGTYGRGRGGAMR
RGGRGQ
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttcccttaactttgttaaaatgttctcaaaatcaaccagtgatggttgaatta
aagaatggagaaacatacagtggttttttagttttctgtgatcgatttatgaatttgcat
atgaaaaatataatatgtacatcaaaagatggagataaattctggaaaatttcagagtgt
tatgtgagaggaaatagtataaaatatattcgtgtgcaagatcaagctatagaacaagcc
attgaagaaacagccgaacaaaaagctagaaatatgggaagaggaagaggaggacgtggt
agaggccgaggtggcatgaataggggcacgtatggacgaggtcgcggaggtgccatgaga
agaggaggaagaggtcaatga
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