Poecilia latipinna (sailfin molly): 106939843
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Entry
106939843 CDS
T08005
Symbol
vps13c
Name
(RefSeq) vacuolar protein sorting-associated protein 13C
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
plai
Poecilia latipinna (sailfin molly)
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plai04131
]
106939843 (vps13c)
Membrane trafficking [BR:
plai04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106939843 (vps13c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_M
VPS13_VAB
VPS13_C
VPS13_N
WWE
Motif
Other DBs
NCBI-GeneID:
106939843
NCBI-ProteinID:
XP_014877892
LinkDB
All DBs
Position
Unknown
AA seq
2366 aa
AA seq
DB search
PKSEFTATGKAELSGQPEPEPRQSDGQTASASEGPPADDVVKVLVDFEVKEVLLSLKKRL
DQQEAPFLVFQLDQLGIHTKVRMFDLCATTYIRQVSMKSLEFKDAGGDPLCLISSSAESG
AELLKVEFCKADRTGPEFCSVYKNTEQMIRVMFSSLDVLLHTQALLSAANFLSMSLSSSS
SVPPAEKDVRQKTEDKMATSRSGVPVSHADPEVVDLKATMTLGAFNILVCDQTSNMADIR
VTGLDTSLLRRGDQTQISARLRDVVVLDVDPRSVHKEAVSIVGDEVFSFSMSLTPNATEG
AGYADTSKTDGQVKLRVGCIRVVYLHRFIMSLLNFSNNFQAAKEALSSATTQAAEKAASS
VLAQRTFRLSLDVWVKAPLIIIPQSSTSHNALVMDLGLITVGNSFSVLPAGERPLPAVVD
NMAVQLSELHLSRTWLDSGSEKPSVELLRPVNLQLSIRRNLAASWYHKMAAVELDGDLRP
TELELSQDDLRVTLQILTENLAEAGGLNGGAAPKEVHLQVPAVAAPPAGEPGKPAGRGER
DEDEAVETLKFSFNVQSLGLVLYHDDPKQQPAGLGHQQNLRLGQLVLRLMKASGRVQSNG
SMEVNTVLTACTLDDLRAGLNRVTSRMVGQRDEGVSQAMVDVTLRQGPVERDLVAVLQKL
YLCASVEFLMAVADFFLQALPPSLAAAVPAAPSNKLPLKQIAEPRGETKPATALTTRLRA
VVVDPEVVFVADLMKADAPALVASFQGDFSLLVEADGSQSVRANLRELKVLAGPFIQSKE
NRAVTTVLQPCSVTLETRTSRTRPASGSVTVEDVIVKISPVILNTVMTITAGMTAKPPAE
PGRASPVEVGDLWSVMNIYNCNFWYLGVDQATEITESYRESDGSTEGETFTAQVKVVQVT
LESGLGHRTVPLLLAETSLNGVAKNWSSLLQLQADLVLEVNYFNEVHAVWEPLIERVDSG
RRRWNLELEIKNNPVMDKSPVHGDDFVFLPEPQTAISICSKDTLNITISKSSLSVFQKLA
EAFSEGAASAFDYTLKEKPPFTLRNALGIPIIVQHSANLRPVGSVAQGKLHELPVDQSMD
LMHSAFDSTIRGKLSALQRQESGLFNLTIVPSGYSEISNIAVDNPGRRLYNVRGPMLQEA
VSVLLQIDAAEGNKIITVRSPLQIINHFTEPFTILKYCPASRTLQSIGTAEPEREFHVDL
EAYRCQLFVRPAGQLDGLYGPSSSCVAWKEQVHCSSEVQSVLQCPASDSNLLPLMVSTLA
VPDDLRHISSRGEEDWDPAYILHLHPMAALCNLLPYTVSYIMENSAEVYEIQEGSTSDLL
NARVSGEIMSVALIQYQGRGWHGHIQIKQELPEFFAVCLTCDTDAALTVDVSVHVMKTAS
RVLLSLFSPYWIINKTSRVLQYSSEDAVFKHPAEYRDVVLFSFKKSNLFTKSKLQLCIST
SSFSDGFSLDTVGSYGCVRCPSTNMDFLVGVSIQMSSFNLTRIVTFSPFYTLVNKSSYEL
EVGELLSQTATRWHYVPSTECLPLWPENGSNKLCVRVVGSLSHSKFFFFSQQDNGTLLSM
DMCGGIMVDINVSNHATIISFSEYYDGAAPALLINHTPWATISYRQSGSEVTHKLEPCEA
RRFAWDDPAGTRKLCWSCKEHSGELDLLQDDVSQFTYDGQAQIHWVSFLDGRQRVLLFTE
DTGVVTRARQSEELEQFQQELKVSLQNLGLSLINNGNRQEIAYIGITSSGVVWEFKPKNR
WKSFSQKNINQLEKVYQSQLSGKTEGGWVRLDSNLEVNLRPAIMMMRQPHSCPVRRNFLS
GIQVEFKRSLHQRSLRAQLHWLQVDNQLPGAVFPIIFHPVPPPKSIALDSEPKPFIDVSV
ITRFNQHSNVTQIKYFMALVQEMALKIDQGFLDAVAALFSPAANLQNDGKKSGLIEGDLK
RLQAEPTDASLSDVSGLSFFEHFHISPVKLHLSLSLGSSDGDSVQENPITQSLNLVLKSI
GATLTNVDDIIFKLAFFEVRYQFYSKENLMWAVGRHYSEEFLKQMYVLVLGLDVLGNPFG
VIRGLSQGVEAFFYEPFQGAVQGPEEFAEGLAIGVRSLFGSTVGGAAGMFSKITGSMGKG
LAAMTMDKEFQQERREDINRPTKDFKDSLAKGGKGLLKGVVGGVTGIVTKPVEGAKKEGA
AGFFKGIGKGLVGVVARPTGGIVDMASSTLQGIQRGPTRAAEATEEVTKLRPARLIREDG
IIRPYDLMESQGFDLYQRIKHLDGEVFRSCSPTPGHRKSNIIVTNRRVFCVKEIDLLGHL
TTDWECWFENFHRPPAVSGSELKIYCKEIHKLMLPKNQEPVRTIRFKDPNSAQKLHEAIW
DAQDAQKQHHMVRQKSQRFLRLGKKQ
NT seq
7103 nt
NT seq
+upstream
nt +downstream
nt
gacctaaatctgagtttaccgccacagggaaggcggagcttagcgggcagcccgaaccag
agccgcgacagtctgatggtcagacggcttctgccagtgaaggaccgcctgcagacgacg
tcgtcaaagttctggttgactttgaagtcaaagaggtgttgctgtccctcaagaagcggc
ttgaccagcaggaggcgccgttcctggtgttccaactcgaccagctgggaatccacacca
aggtccgcatgttcgacctgtgcgccaccacctacattagacaggtttccatgaagagcc
tagagttcaaagacgccggcggcgacccgctgtgtctcatcagctcctcggctgagtccg
gggccgagctgctcaaggttgagttctgcaaggcagaccgcaccggaccagagttctgct
ccgtctacaagaacacggagcaaatgatccgggtgatgttctcgtctctggacgtcctgc
tccacacccaggctctcctgtccgctgccaacttcctgtccatgtctctgtcgtcgtcca
gcagcgtgccacctgcagagaaggacgtccggcagaagacggaagacaagatggcgactt
ccaggtccggtgtcccggtctcgcatgcagacccagaggtggtggacctgaaggcgacga
tgacgctgggagccttcaacatcctggtgtgtgaccagacctccaacatggctgacatca
gagtcacagggttggacacctcgctgctgaggcgaggcgatcagacacagatatcggccc
ggctgcgggacgtcgtcgtcctggacgtagatcccaggtccgtccacaaggaggccgtct
ccatcgtgggagacgaggtgttcagcttcagcatgagtctgactcccaacgccaccgagg
gcgccggctacgccgacacctctaagacggacggccaggtgaagctgagggtggggtgta
tccgggtggtctacctgcacaggttcatcatgtctctgctgaacttcagcaacaacttcc
aggcagcaaaagaggcgctgagctcggcgacgacgcaggctgcagagaaagctgcgtcca
gcgtcttggcccagaggacgttccgtctgtccttggacgtctgggtgaaggctcccctca
tcatcatcccccagtcctccacttcccataatgcacttgtgatggacctgggtctcatta
cggtggggaacagtttctctgtgctgccggcgggagagcgccccctgcctgctgtagtcg
acaacatggctgtgcagctgtctgagctgcacctgtccagaacctggttggactccgggt
ccgagaagccgagcgtcgagctgctgaggccggtgaacctgcagctcagcatcaggagga
acctggcggcgtcctggtaccacaagatggccgccgtggagctggatggagacctgaggc
ccacggagctggagctcagccaggacgacctcagggtcacactgcagatcctgacggaga
acctggcagaagccggcggtctgaatggcggcgccgccccaaaagaggtccacctgcagg
ttccagcggtcgcggcgccccctgcaggtgagcctgggaagccagctgggagaggagagc
gagatgaggatgaagccgtggagacgctgaagttttccttcaacgtccagtctctgggtc
tggttctgtaccacgacgacccgaaacagcagcccgcgggccttggccaccagcagaacc
tcagactgggccagctggttctgcgtctgatgaaggcttcaggacgggtccagtccaacg
gcagcatggaggtcaacacggttctgacggcgtgcactctggacgacctgcgggccggac
tgaaccgggtcacgtcacggatggtgggacagagggacgagggcgtctcccaggccatgg
tggacgtgacgctccgccagggtccagtagaacgagacctggtggccgtcctgcagaagc
tctacctgtgtgccagcgtggagttcctcatggcagtcgcagatttcttcctgcaggctc
tgcctccgagtctggctgcagccgttcctgctgccccgagcaacaagctgccactgaagc
agatcgcagaaccacggggcgaaaccaaacccgccacggcgctgacgacccggctgcggg
cggtcgtcgtggacccggaggtggtgtttgtggccgacctgatgaaggcggacgcgccgg
cgctcgtcgcctcgtttcagggcgacttcagcctgctggtggaggcggacggatcgcaga
gcgtaagggccaacctgagggagctgaaggttctggccggcccgttcattcagagcaagg
agaacagagccgtgaccactgtgctgcagccctgctctgtcacactggaaaccagaacca
gtcggacccggccagccagcggctcggtgacggtggaggatgtcatcgttaagatctctc
cggtcatcctcaacacggtgatgacgataacggccgggatgacggcgaagccgccggccg
agccgggtcgggcgtctccggtggaggtcggcgacctgtggtccgtcatgaacatctaca
actgcaacttctggtacctgggggtggaccaggccaccgagatcacagagagctaccggg
agtctgacggcagcaccgagggggaaaccttcaccgcgcaggtcaaggtggtccaggtga
cgctggagtcgggtttgggccatcggacggtcccgctgctgctggctgagacgtccctta
acggagtggccaagaactggtcgtctctgctgcagctgcaggccgacttggtgctggagg
tgaactattttaacgaggtccacgccgtgtgggaaccgctaatagagcgagtggacagcg
gccggcgccgctggaacctggagctggagattaagaataatccagtcatggacaagagtc
ctgtgcatggagatgactttgtgtttcttcctgaacctcaaactgccatcagcatctgct
ccaaagacaccctgaacatcaccatctccaagtccagcctcagcgtcttccaaaagcttg
cagaggcattcagtgagggagcagcctcagccttcgactacactctgaaggagaaacctc
ccttcaccctgagaaatgctctaggcatcccaattatcgtgcagcacagcgccaacctga
ggccggtcggatctgtggcacaaggaaaacttcacgagctgccagtggatcagagcatgg
acctgatgcactctgcttttgattccacaatcagagggaaactgtcagctctgcagcgtc
aggagagcggcctgtttaacctcaccatcgtgccttctgggtacagcgagatctccaaca
tcgcagtggataatcctggcagacgtctctacaacgtgcgaggtccaatgctgcaggagg
cggtgtcggtgctgctgcagattgatgctgctgaaggcaacaagatcatcactgtacgct
cccccctgcagattataaaccacttcacagaacccttcaccatcctgaaatactgcccag
catccagaaccctgcagagcattggcacagcggagccggaacgggagtttcatgttgatc
tagaagcatacaggtgccagctatttgtccgtccagcgggtcagctggacgggctgtacg
gtccgtcttccagctgcgtggcctggaaggagcaggtccactgcagctctgaggtccagt
ccgtgctgcagtgtcctgcgtcggacagcaacctgctgccgctcatggtcagcacgctgg
ccgttcctgacgacctgcggcacatcagcagccgcggtgaggaggactgggaccccgcct
acatcctccacctgcatccaatggcagcgctgtgcaacctgctgccgtacaccgtcagct
acatcatggagaactcggctgaagtctatgagattcaggagggcagcacctcagacctgc
tgaacgcccgcgtgtcgggtgagatcatgtctgtggcgctgatccagtaccagggccggg
gctggcacggacacatccagattaaacaggaactgccggagtttttcgccgtgtgcctga
cctgcgacacggatgcggcgctgacggtggacgtgagcgttcacgtgatgaagacggcga
gccgcgtcctgctgtcgctcttcagtccgtactggatcatcaacaagacgagccgggtgc
ttcagtacagctcagaggacgccgtcttcaagcatccggccgagtaccgagatgtcgtcc
tcttctccttcaagaaatcaaatctgttcaccaaaagcaagctgcagctctgcatctcca
ccagctccttttctgacggcttctccctggacacagtggggagctacggttgcgtccgct
gtccctccaccaacatggactttctggtgggtgtcagcatccagatgagcagcttcaacc
tgaccagaatcgtcaccttcagtccgttctacacgctggtcaacaagtcttcatacgaac
tggaggtgggagaactcctcagccagacggccaccaggtggcactacgttccgtccaccg
agtgcctccctctgtggccggagaacggctccaacaagctttgtgtccgagtggtgggat
cactgtcccactccaagttcttcttcttcagccagcaagacaacggcaccctgctgagca
tggacatgtgtggagggatcatggtggacatcaacgtctccaatcacgccaccatcatca
gcttcagtgaatattatgacggagccgcccccgccctgctgattaaccacacgccctggg
ccaccatcagctacaggcagagtggttcagaggtgacccacaagctggaaccctgcgagg
cccgacgctttgcttgggacgaccctgcaggaacccgcaagctctgctggagctgcaagg
agcattcaggggagctggacctgctgcaggatgatgtgagtcagtttacctatgatggcc
aggctcagatccactgggtgtccttcctggatggacggcagcgggtgctgctgttcaccg
aggacactggcgtggtcaccagggctcggcaatcggaggagctcgaacaatttcagcagg
aactgaaagtgtctctgcagaacctcggcctgtcgctcatcaacaacggcaaccggcagg
agatcgcgtacatcggcatcaccagctccggtgtggtttgggagtttaagccaaagaatc
gctggaagtccttcagtcagaagaacatcaaccagctggagaaggtttaccagagtcagc
tgagtgggaagacggagggaggctgggtcagactggacagcaacctggaggtgaacctcc
gtccagctatcatgatgatgcggcaaccccattcgtgccctgtgaggaggaacttcctgt
ctgggatccaggtggagttcaagaggtcactgcaccagcgcagcctgagagcccaactgc
actggctgcaggtggacaaccagttgcccggtgcggttttccccatcatcttccatccag
tccctccaccaaagtccatcgctctggactcagagccgaaacccttcatcgatgtgtctg
tcatcacaaggttcaaccagcacagcaacgtcacccagattaagtacttcatggctctag
ttcaggagatggcgttgaagatcgaccaaggtttccttgatgctgttgcagctctgttca
gcccagctgctaacctgcagaatgatgggaagaagtcgggactcatcgaaggagatctga
agcgccttcaggccgagccgactgacgcctctctgtccgacgtgtcgggactcagcttct
tcgagcattttcacatctcacctgtcaagctccacctcagtctgtctctgggctccagcg
atggtgactctgtccaggagaaccccattactcagtccctgaacctggtgctgaagagca
tcggtgctactctgaccaacgttgacgatatcatcttcaaactggccttctttgaagtga
ggtaccagttctacagcaaagagaatctgatgtgggccgtgggccgacactactctgaag
agttccttaagcagatgtatgttctggttctcggcctggatgtgctgggtaatccgttcg
gagtgatccgaggcctctcccaaggcgtggaagccttcttttatgaaccattccagggag
ccgttcagggtccagaggagtttgctgaaggtttggcgatcggggtccgcagcctttttg
gttcaactgttggtggcgctgcaggaatgttctccaagatcacaggttccatgggtaaag
gcctggctgccatgaccatggacaaggagttccagcaggaacgccgggaggacataaacc
ggccaacgaaggacttcaaagacagtctggccaaaggaggaaaaggactgctgaagggcg
ttgttggtggggttactggcattgtcaccaaaccagtggaaggagccaagaaggagggcg
cggccggtttctttaagggcatcgggaagggcctggtgggcgtggtggcgcggcccaccg
gcggcatcgtggacatggccagcagcaccttgcagggcatccagagaggccccaccagag
cggccgaggcgacagaggaggtgaccaaactccggccggcccgtctgatccgggaggacg
ggatcatccgaccttatgacctgatggagtcgcagggtttcgacctctaccagaggatca
aacatctggacggtgaagtgttcagaagctgcagtccgaccccgggccacaggaagtcca
acatcatcgtcaccaacaggcgcgtcttctgtgtgaaggagatcgatttgctgggtcacc
tcactactgactgggaatgctggtttgagaacttccaccgtcctccggcggtttctggat
cagagctcaagatttactgcaaggagatccataaactgatgcttcctaaaaaccaggagc
ccgtcagaacgatccggttcaaagacccaaattctgcccagaagctgcatgaagccatct
gggacgctcaggacgcccagaagcagcaccacatggtcaggcaaaagtcccagcgcttcc
tgagactcggcaagaagcagtga
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integrated database retrieval system
