Poecilia latipinna (sailfin molly): 106941728
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Entry
106941728 CDS
T08005
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai04510
Focal adhesion
plai04512
ECM-receptor interaction
plai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106941728
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106941728
09142 Cell motility
04820 Cytoskeleton in muscle cells
106941728
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plai00536
]
106941728
Glycosaminoglycan binding proteins [BR:
plai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106941728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
106941728
NCBI-ProteinID:
XP_014880315
Ensembl:
ENSPLAG00000009482
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MFSFVDLRLVLLLGATVLLARAQGEDDRTGASCTLEGQVFADRDVWKPEPCQICVCDSGT
VLCDEVLCDEPTDCLNPIVPQGECCAICPNDGYQSAQVKGPKGDCGPKGVRGPPGPSGRD
GLDGQPGLPGPPGPPGPPGLGGNFSPQMSGGYDEKSPAMPVPGPMGPMGPRGPTGPPGQS
GPPGPNGHPGEPGEAGAPGPMGPRGPAGPPGKNGEDGEAGKPGRAGERGPSGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEAGAPGENGTPGAMGPRGLPGERGRAGPS
GAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGPKGDVGAQGARGPEGPAGARGEPGNP
GPAGPAGPSGNPGADGAPGAKGGPGAPGVAGAPGFPGPRGPPGPQGAAGAPGPKGNTGDV
GAPGFKGEPGAKGEAGATGVQGPPGPPGEEGKRGARGEPGAAGARGAPGERGGPGGRGFP
GSDGPAGPKGAPGERGAPGLVGPKGSTGEPGRTGEPGLPGAKGMTGSPGSPGPDGKMGAS
GAPGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGPTGAAGAAGKDGEV
GAQGPPGPAGPAGERGEAGPSGSPGFQGLPGPQGAVGESGKPGEQGLPGEPGAAGPAGAR
GDRGFPGERGAPGPIGPAGTRGSPGSPGNDGAKGEPGAPGAPGAAGPPGLQGMPGERGAA
GLPGLRGDRGDQGAKGADGAPGKDGPRGLTGPIGLPGPAGAPGDKGENGAPGLVGPAGAR
GAPGERGEAGPPGPAGFAGPPGADGQPGAKGEPGDNGAKGDAGPPGPAGPTGAPGPQGPV
GNTGPKGARGAAGPPGATGFPGAAGRVGPPGPAGNSGPPGPPGPSGKEGPKGNRGETGPA
GRPGEIGAAGPPGTPGEKGSPGADGTAGAPGLPGPQGIAGARGIVGMPGQRGERGFSGPP
GPAGEIGKPGPAGPGGERGPPGPMGPPGLAGAPGEPGREGNPGNEGPSGRDGAPGPKGDR
GESGAAGAPGAPGPPGAPGPVGPAGKTGDRGETGSAGPAGPAGPAGPRGPAGPAGARGDK
GETGEAGERGMKGHRGFTGQQGPPGPPGASGEAGPAGSSGPAGPRGPAGSAGAPGKDGMS
GLPGPTGPPGPRGRSGEMGPAGPPGPPGPPGPPGAPGGGFDIGFITQEKAPDPFRMFRAD
DANVLRDRDLEVDSTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWIDPD
QGCTQDAIKVYCNMDTGETCITPTQPEVAKKNWYMSKNIKEKKHVWFGEAMNDGFQFDYG
SEGSLPEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDAAAGNLKKSLLLQGSNEIEIR
AEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDVGAPDQEFGLEVG
PVCFL
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggtgctgctgctcggcgccacagtgctcctggcc
agggcgcagggcgaggacgaccgcacaggtgccagctgcacccttgaaggtcaggtgttt
gcggaccgggacgtgtggaaaccagagccatgtcaaatctgtgtgtgtgacagcggaact
gtgttgtgcgatgaggttctatgcgacgagccaactgactgcctcaaccccatagtcccc
cagggcgagtgctgcgccatctgccccaatgacggctaccagtctgctcaggttaagggg
cccaagggagactgtggacccaagggagtgcggggtcctcctggtccctctggtagagat
ggcctggacggccagcctggtctgccaggacctcccggccctcctggaccccctggcctt
ggtggaaacttctcccctcagatgtctggtggttatgatgagaaatcccctgctatgcct
gtgcctggaccaatgggccccatgggaccccgtggacctactggacctccaggtcaaagt
ggacctccaggacccaatggccatcctggtgagcctggagaggctggagcccctggcccc
atggggccacgcggacctgcaggacctccaggaaagaacggagaggatggtgaggctggc
aaacctggtcgtgctggtgagcggggaccttctggtccacagggtgctcgtggttttcca
ggaacccctggacttcctggaatcaagggtcacagaggattcagcggtctggatggtgct
aaaggagacactggccctgctggacccaagggagaggctggagcgcctggtgagaatgga
actcccggtgctatggggcctcgtggtctgcctggtgagaggggtcgcgctggtccttct
ggagctgctggagcccgtggtaacgatggtgctgctggtgctgctggacctccgggtccc
actggccctgctggacctccgggattcccaggtggccccggacccaagggtgatgttgga
gcacagggagcacgtggacctgagggccctgctggagctcgtggagaacctggaaacccc
ggacccgctggcccagctggaccttctggaaaccctggagctgatggagcccctggtgct
aaaggaggccctggtgcccctggtgttgctggagctcctggtttccctggaccacgtgga
cctccaggaccacagggtgcagctggtgctcctggacccaagggtaatactggtgatgtt
ggtgccccaggattcaagggagagcctggtgcaaagggagaggctggtgctacaggtgtt
cagggacccccaggacctcctggtgaggagggcaaaagaggagccagaggagaacctggt
gctgcaggtgcccgtggagcccctggagagcgtggcggccctggtggtcgtggtttccct
ggttctgatggccctgctggacccaaaggtgccccaggtgagcgtggtgctcctggtctt
gttggacctaaaggttccaccggtgagcctggtcgtaccggtgagcctggtctccctgga
gctaagggtatgaccggcagccctggcagccctggacctgacggcaaaatgggagcttct
ggagcccctggacaagatggacgtcctggaccccctggccctgttggagcaagaggtcag
cctggagttatgggatttcctggaccaaagggagctgctggtgaggctggaaagcccggt
gagagaggagtcatgggacccactggcgctgctggagctgctggaaaggatggtgaagtt
ggtgctcaaggtcctccaggccctgccggtcctgctggtgagagaggagaggcagggcct
tctggttcccctggattccagggtcttcctggacctcagggagccgttggtgagagtggc
aagcctggagagcagggtctgcctggtgagccaggagctgcaggtcctgctggagccaga
ggcgacagaggattccccggtgagcgtggtgcccccggccccattggccccgctggcacc
cgtggatcccctggttctcctggtaatgatggtgctaagggagaacctggagcccctggt
gctcctggagctgctggtcctcctggactgcagggaatgcctggtgagcgcggagctgct
ggccttccaggactgagaggagacagaggtgaccaaggagctaagggtgctgatggtgca
cctggtaaagatgggccccgtggcttgactggaccaattggacttcctggaccagctggt
gctcctggtgacaagggagagaatggtgcccctgggcttgtcggccctgctggagcccgc
ggagcccctggtgagcgcggtgaagctggaccacctggacctgctggatttgctggacct
cctggtgctgatggacagcctggtgctaagggagagcctggagataatggtgctaaggga
gatgctggacctccaggccctgccggaccaactggtgctcccggacctcagggtcctgtt
ggaaacactggccctaagggagcccgtggagcagctggacctcctggtgctacaggcttc
cctggagctgctggcagagttggccctccaggccctgcaggaaactctggaccccccgga
cctcctggaccatctggcaaggagggacccaaaggaaaccgtggtgagactggacctgct
ggtcgccctggtgagattggtgctgctggacccccaggaactcctggagagaagggaagc
cctggtgcagatggtactgctggagctcctggtctgcctggaccccaaggtattgctgga
gcacgtggtatcgttggtatgcctggacagagaggagagagaggtttctctggtccccct
gggcctgcaggagaaattggaaagcctggacctgctggccctggtggtgagcgcgggcct
cctggacccatgggaccccctggtcttgctggtgcccctggagaacctggacgtgaggga
aaccctggtaatgaaggaccatctggacgcgatggagcccctggacccaaaggagaccgt
ggagagagtggcgctgcgggagcccctggtgcccctggaccccctggtgcccctggacct
gttggacccgctggaaagactggtgaccgtggagagactggctctgctggccccgctggc
cccgctggccctgctggacctcgtggccctgctggacctgctggagctcgtggagacaag
ggagagactggagaggctggagaaagaggcatgaagggacacagaggatttactggccaa
cagggacctcctggacctcctggagcttctggagaggctggacctgctggttcttctgga
cctgctggacccagaggtccagctggatctgctggtgctccaggtaaggacggtatgtct
ggtcttcctggacccactggacctcctggacctcgtggacgttctggagagatgggacct
gctggtcctcctggacctccaggacccccaggacctcctggtgcccccggtggtggattc
gacattggtttcattacccaggagaaggcccctgatcccttccgcatgttccgtgctgat
gatgctaatgttctccgtgaccgcgacctggaggtggacagcaccctgaagagccttagt
caacagattgagcagatccgcagccctgacggaaccagaaagaaccctgccagaacttgc
agagatctcaagatgtgccaccctgactggaagagcggtgagtactggattgaccctgac
cagggttgcactcaggatgccatcaaggtctactgcaacatggacaccggagagacctgc
ataacaccaactcagcctgaggttgccaagaaaaactggtacatgagcaagaacatcaag
gagaagaagcacgtctggttcggagaggctatgaatgacggcttccagtttgactacggc
agcgagggttctctgccagaggatgtcaacattcagctgaccttcttgcgtctcatgtct
actgaggcatcccagaacatcacctatcattgcaagaacagcattgcctacatggatgct
gctgccggcaacctcaagaagtccctccttctccagggctccaatgagattgagatcaga
gctgagggcaacagccgtttcacctacagtgtcctggaagatggatgcacgtcacacacc
ggaacatggggcaagacagtcattgactataagacaacaaaaacatctcgcctccccatc
attgatattgctcctatggacgttggtgctccagaccaagagtttggccttgaagttgga
cctgtctgtttcttgtaa
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integrated database retrieval system
