Poecilia latipinna (sailfin molly): 106947682
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Entry
106947682 CDS
T08005
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106947682 (col17a1)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106947682
NCBI-ProteinID:
XP_014888331
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MDELTKQMEISGEKVLTETVTSSTRLTSLPPKGTSGSNHRNMSSGAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGRGGSSGSTYL
VSSVSKVRSSSSGGARRAQTGGTSVGLSPGFRERKTIASRSGGYDGSSSGNSSPEFSRKD
YGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSASV
TLPVPKKASVETKTVSVATQSASTLFEPVAQMNGFNTIDVSGLYDSRLTSRQRDSGVQTG
QHTVTVKSCHCDAGVKSSQYDVSLSSGQYDPGLKSSQYDVCLSSGQYDTGLKSGRYDMSL
KSGQYDTAGRSGQYDTLDSAFPTFSWSTSTLPSSSTTVVAGNTSSYTYQLGQVSANNMSG
GAPPLSPVPQQSLSVYGFQNNLAPTSIGVLTTSGGNVTTNLGGYGVQKNVSNGSAVISSG
ISTATRSQTDDVYKRDYRYMASEKENVPARREGEMLILAKDSGKQFTTTTSSTHIAGGSL
SGDSIKKEKLISSYVDTGTLKAETGNSYYGSSGVLMKDKATYAEIRRDSGIFGGGGLCCC
SDSCCSWWKWLLGLLLLCLLLLGLLFGLIALAEDVRKLKKRVSTLETEVSVANAHTSRLS
GSSNDINTYVSGGGGGTGTDNTLVHGFGGAGGGGSSDSKMQIIIAGAGAGGSASRNDADV
GVVGAGGAGGAVGAGTSSSSSSGTSFSGSAGSAGTNLSGGAGSAGTSFSDGVSAGGAGFG
GGTSSSGTSFGGGTGSSGTGFGGGTGSSGTGFGGGTGSSGTGFVIGTGVGTSGGVSGGTA
VSGRYIDSAFLQMAIHQMLRSEMQSQAFRGFLASSVQGERGLPGPKGDSGLKGEPGFPGI
PGTPGPMGHAGPEGPKGQKGSQGEHGVEGPPGIRGREGPPGPRGDPGPAGFGLKGDKGEA
GSVGPAGAPGQKGAQGIQGLHGSPGPQGFRGEAGLPGPKGDRGLAGFQGLKGETGEKGSR
GLQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPPGPPGLRGSAGPPGDAGLPGTP
GLQGPPGIPGNPGRPGAKGEPGQAGRIINAAGSTSVGIPGPPGPAGPPGPAGPPGLSGPI
GPAGLPGPPGPKGDRGYKGEQGETGTTRETIYSSTAERQFGAGGSSSFHGIPGPPGPPGP
PGRPGDSRQGPPGPPGPPGYGIPGPKGEKGDVGFASSSGTYYSGPPGPPGQPGPKGATGS
PGPRGYTGEQGPPGVPGTPGRAGSSVAYGGNTVPGPPGPPGPPGLPGLPGVKGDTGAPGI
PGASRGSVSVTSGPAGPPGPPGPPGLPGSFASSTEMRQYISDYLSRYRLSSLPGPPGPPG
PPGLPGTFSGSIDDIATRIIAYLRRSDSGFSIGIQGPPGPPGPPGPASGSLTVSALIAML
QRDDVRRYLSGPPGPQGPPGPPGASGGLSGTYRIEEVATYVFNIMNERGIARGPPGPRGL
PGPPGAPGAGGSGFTTATIDYSALIRNSDFRSWITSAVQQGPPGPPGVPGLPGPPGPQGP
PGISTATVYGSGSRGYSLEEIQRYLQGSGFRGLPGPPGPPGPQGPPGAVTGSVTYSGNFP
RESIRAEIQQYLSSDSVRRTIVGPPGPQGPKGQRGDRGEPGYSQSYIQSQSYQQQSDDRY
GSQRRDVDVSRLTEMLDYSNVAMKVTDYIKNQGLLQQYISDGSWRTNVRAIQGPPGPPGP
PGPPGHSRVIGSYGNVTADLMDFFRRHGTVPGPPGSPGLKGDRGYPGPKGDKGDPGPPGL
PGIPAPLTVQIPHKVQKREAGDKVAVRRKRRRSQAGFG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaagcagatggagatctcgggagaaaaggttctgacagaaaccgta
acctcctccacccgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcggtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcctcatcctctataggcgtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcggaagctacatcgat
ggagagggctatgggagcggaggaggagggagaggaggaagcagtggaagcacttatctc
gtgagctccgtgtcaaaggttcggtccagctcgtcgggcggtgccaggagagctcagact
ggagggacatcagtggggctgtcgccaggtttccgagagaggaagaccatagccagccgc
tcgggaggctacgacgggagctccagtggtaattcctccccagaattttcacgcaaagac
tatgggaactactgctccggcgccacaagagggaggagtgaaagcagagagagcgagatc
agagccagattacaaagtgcctccccatctgccggaagatgggcagagttggaagatgtg
aagaagctgctgaagggacgctccagcagcgtcagtccgacccgctcctccgcctcagtc
accctgccagtacctaaaaaagccagcgtggagaccaagaccgtctcagtggccactcag
tcagcttcgactctgtttgagcctgttgctcagatgaatgggttcaacaccatcgacgtg
tcgggcctctacgacagcagactgacatccaggcagcgcgactctggtgtccaaacaggc
caacacactgtcacagtaaagtcatgccactgtgacgctggagtcaaatccagccagtat
gacgttagcctgagttcaggtcagtacgatcctggtctgaagtcaagccagtatgacgtt
tgcctgagctcaggtcagtacgataccggcctgaaatctggacgatatgacatgagtctg
aaatcgggccagtacgacaccgccgggagatcaggccaatacgacaccctggattcagcc
tttcccactttctcctggtccacctccacgctgccctcctcctccacgaccgtcgtcgct
ggcaacaccagcagctacacctaccagctcggtcaggtcagcgccaacaacatgtcggga
ggcgccccgccgctcagccccgtcccacagcaatctctgtcagtttatggctttcagaat
aatctggctcccacctctatcggtgtgctcaccaccagcggcggcaacgtaaccactaac
ctgggagggtatggcgtccagaagaacgtgtcaaacggcagtgctgtcataagctctggg
atctctacagccaccaggtcccaaaccgatgacgtctacaagagagactacagatatatg
gcctctgaaaaggagaacgttcctgccaggagggagggagaaatgctcattctggcaaaa
gacagtggcaagcagtttaccaccaccaccagcagcactcatatagctggaggttcactt
tcaggagactcaataaagaaggagaagcttatttccagctacgttgacacgggcactctg
aaagcagagacaggcaattcatactacggatcatccggagtcctgatgaaagacaaggca
acctatgcagagatccgcagagacagcggcatctttgggggaggaggactgtgctgctgc
tccgactcctgctgctcctggtggaagtggctgctgggcttgctgctcctctgcctgctt
ctgctcgggctcctgtttggcctcattgcattggccgaggacgtgaggaagctcaagaag
cgagtgtcgactctggagaccgaggtctcagtcgccaatgctcacactagtcggctgtcg
ggttcttccaatgacatcaacacctatgtgagcggtggaggtggaggcaccggcactgac
aacacactagtccacggattcggaggtgcaggtggaggtggaagctcggactccaaaatg
caaatcattattgctggtgctggtgcaggcggatctgccagtcggaatgatgctgatgtc
ggcgttgtgggtgccggaggtgctggaggggctgttggagctggaactagctccagtagc
agctctggtaccagtttcagtgggagcgccggcagtgctggtaccaacttgagcggcggt
gctgggagtgctggtaccagtttcagtgacggtgtcagtgcaggtggtgccggtttcggc
ggcggcaccagcagttccggtaccagttttggtggcggcactggcagttctggtaccggc
tttggcggcggcaccggcagttccggtaccggctttggcggcggcaccggcagttccggt
accggtttcgtcattggcaccggtgttgggaccagcggtggtgtcagcggtgggaccgca
gtgagtggaagatacatagatagcgccttccttcagatggccatccatcaaatgttgagg
tcagaaatgcagtcacaggcattcagaggcttcctggcatcctcagtgcagggagagagg
ggattacctggacctaaaggggactctggattgaaaggggaacctggtttccctggaatt
ccaggcacaccaggtccaatgggacatgctggtcctgagggtcccaaaggacagaaagga
agccaaggtgagcatggagtggaagggccaccaggtatcaggggtcgcgaaggaccacct
gggcctagaggcgacccaggacctgcaggctttggactcaaaggggataaaggtgaagct
ggatctgttggacctgctggggcccctggacaaaaaggtgcacaaggaattcaagggtta
cacgggtcacctggtccccagggtttccgtggtgaggcaggactacctggaccaaaaggt
gatagagggcttgctggattccaaggactcaaaggtgaaacaggtgaaaagggatccaga
ggtctgcaaggggaacctggtttaccaggaccagcaggagagaaaggctccaaaggatcc
atgggactttctggacaagacggtgaaaagggatcaagaggtgaccagggaccacctggc
ccgcctggactcaggggttctgctgggcctcctggagatgccggacttccaggaacacca
gggcttcaaggaccaccaggaattccaggaaatcccggccgaccaggagccaaaggtgag
cccggtcaagctggacgaatcatcaacgcagccggctctacttctgttggcatcccaggg
ccacctggacctgctgggcccccgggtcccgctggtcctccgggactgtcaggtcccatt
ggccctgctggtctgcctggcccacctggtcctaaaggtgacagaggatataagggagag
cagggagagactgggacaaccagggaaaccatatattcatctacagcagagaggcagttt
ggtgctggaggaagctcctctttccatggcatacctgggccaccgggtccacctgggcct
cccggacgtccaggcgactcgagacaaggacctccaggaccaccagggcctccaggttat
gggataccaggacctaaaggagaaaagggagatgtgggtttcgcatccagctcaggaaca
tattattctggaccgccaggacctcctggacagcctggacctaaaggagcaacaggctct
cctggaccccgcggatacacaggtgagcaaggcccaccgggcgtgcctgggacgccagga
agagcaggaagctccgttgcgtatggaggaaacacggttcctggaccaccgggtccaccg
gggcctcctggtctcccagggttacctggagtgaagggagacactggagctccaggaatt
ccaggcgcatcaagaggttcagtctcagtcacctcgggccccgctgggcccccaggaccc
ccaggacctcccggcctcccaggttccttcgcttcctccaccgagatgcggcagtacatt
tcagactacctgagtagatacagactgagcagtctacctggccctccaggtccacccggg
cctccaggactcccaggaaccttctcaggatctatagacgacatcgctactcgcatcatt
gcatacctgcgacgttcagactcaggcttcagcatcggcattcagggacctccaggaccg
cctggtcctcctgggcctgcctctggctccctgaccgtcagcgctctcatcgccatgctt
cagagagatgacgtgagaagatatttgtctggaccacctgggcctcaaggacctcccgga
cccccaggggcctcaggaggactctccggcacttacagaatagaggaggtagccacatat
gtcttcaatatcatgaacgagagggggattgcgagaggcccgccaggtccacgaggtcta
ccgggcccccccggagctccaggcgcaggaggctctggcttcaccaccgctaccatcgac
tactcggctctgatccgaaattcagatttccgttcctggatcacttccgctgtgcagcaa
ggtcctcctggtcctccaggtgtcccagggctgccagggcctcctggtcctcaggggccc
ccagggatctccacggcgacggtgtacggatcgggaagtcgtggctacagcttggaggaa
attcagcgctacctgcagggttctggattcagaggtctccctggacccccgggcccccca
ggtccccaggggccaccgggcgctgtcaccggatcagtgacctacagtggaaatttccct
cgggagagcatccgcgctgaaattcaacagtatctgtctagtgacagcgttcgacgtacc
attgtcgggcctccaggtcctcaaggtccgaagggtcagaggggagatcgcggagagcct
ggctactcccagagctacattcagagccagagctaccaacaacagagcgacgatcgctac
ggctcccagcgcagagacgtcgatgtcagcaggctcaccgagatgctcgactactccaac
gtcgccatgaaagttacagactacattaagaatcaaggcctgctgcagcagtacatctcc
gacggttcatggaggacaaacgtccgagcaattcaaggacccccaggtcctccgggccct
ccaggaccgcccggccacagccgtgtgattggctcctacggcaacgtcacagctgacctc
atggacttcttcaggagacacggcaccgttcccggcccgccaggaagcccaggtctaaag
ggagacagagggtatccaggacccaaaggagacaagggtgatccgggacctccaggttta
cctggaatcccagcgcccctcactgttcagattccacacaaagtgcaaaagagagaagca
ggcgataaagtggcggttcgtcgaaagcgtcgtcgatctcaagccggcttcggctga
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integrated database retrieval system
