Poecilia latipinna (sailfin molly): 106948960
Help
Entry
106948960 CDS
T08005
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
plai
Poecilia latipinna (sailfin molly)
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plai03000
]
106948960 (rc3h1)
04121 Ubiquitin system [BR:
plai04121
]
106948960 (rc3h1)
Transcription factors [BR:
plai03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
106948960 (rc3h1)
Ubiquitin system [BR:
plai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106948960 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
FYVE
zf_CCCH_4
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
106948960
NCBI-ProteinID:
XP_014890363
Ensembl:
ENSPLAG00000017430
UniProt:
A0A3B3VT57
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQNYEVARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRMAGRSGVVFPDDGLTPDVTVTRKHSPVT
NGSVAPNLPQLVARGTDTVPYELLSKTAKQDGGSPSVPGSPPDVLDSMPKSSIPLPPHAM
AHPRIPADHLTGVKHIPGVPRGSPVYPQPQPRDVYDIRPPPASQYEPPQYPGGYPYQQPT
QYVREYIRNPPPPSESGPPYHDPYSGYSTPDRPYPSQHSGPPFPYSHPSHYDRGHHSTYN
VPPPPPQPYPSQRDPLDVPPPSAGQANSLYHQEASSRDRYAPDGYYPPGSQPPPMRTYVR
GSQYSGSQPSLDYLHRRRQELLSQLAERKVISPPPFAASPTLSHPFPSDYPPEYGDESSK
TMKCREPDYTGQYSPWSCETIGSYINSKDAKPKNLMAPGSMEMMNVDDKGQREPSLEAPR
RGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASTLQNPNSKHMTMPDY
SYGSHGAWAGASYPSHQTASSSQGHFERLPMTTPDREQLKIELQQVNQQITQQTQMHNIE
AASNSLLLQREASALVVQPVQPSQGSAAVVPQQPQPKWPVGGAGVPAVSNEQLSLELHQV
EREIGKRTREMALQENQVAHDVQQYKMQPAENGQPEHENQLEEISLALGEVSNGSSSLQE
NAVGGSMMSLTNKTAGLSMCSDPVVAGSEMQKNGVVHSCS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcgccacaatggacagagtttctgctgtgcccaatctgcacacagacc
tttgaagagactgttcgccggcccatcagcttgggctgtggacatactgtgtgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacggccatcagcacagac
atcgaacagttacctgtgaacacagccctgttgcagctggtgggaggccaggttcccaag
gctcagccggttgccttgattacaagtccagaggacactcagaactatgaggtggctaga
cagtgtgtggaggagctggccctgtacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacagcccaaagcatgctgagtcgacccatgcaaaggaaattggtaactcta
gtccactgccagctggtggaggaggagggacgggtcagagccatgagagcggcgcgctct
cttggcgagcgaactgtcaccgaactcatcttgcagcaccagaatccccagcagctgtcc
tctaatctgtgggccgctgttcgtgcacggggctgtcagttcctaggcccagcaatgcag
gaggaagccctgaagttggttctcctcgctttggaagatggttcggctttgtccagaaaa
gtgttggttctttttgtagtccaaaggcttgaaccacgctttcctcaggcctcgaaaacc
agcataggccatgtggtacagctgctttacagagcttcctgcttcaaggttaccaaacgg
gatgaagattcatctctcatgcagctgaaagaggagtttcgtacgtacgaggctctgcgg
cgggagcatgactctcagattgttcagatcgccatggaaggggggttgcgcatcgcgcct
gaccagtggtcttctctgttgtatggagatcagtcacacaagtcacatatgcagtctatc
atagataagctgcagaccccggcatcttttgctcaaagtgtgcaggagctgacaattgca
ctgcaaaggactggggacccagccaacctcaacagactacgaccccacttagagctgctg
gcaaacatcgatcccagtcccgatgctcctccgccaacatgggagcagcttgagaagggg
ttggtagcagtgaaaacagtggtccatggcctggttgatttcattcaaaaccacagcaaa
aaaggagctgatcctcaacagcctcctcagcacagcaaatataaaacatacatgtgtcgt
gacatgaagcagaaaggcggctgtcctcgcggtgccagctgtacctttgcccactctcag
gaagaactagagaagtatcgtaagatgaataagcgcatggcgggtcgctcaggagtggtg
tttccagacgacggccttactcctgatgtaacggtgacccgaaagcattcaccagtcacc
aatggcagcgtcgcgccgaacttgccccaattagtcgcccgcggcaccgacacagtccca
tatgagttgctgtctaaaactgccaagcaggacggaggaagtccaagtgttcctggatcg
ccaccagatgtcctggactccatgcccaaaagcagtataccactgccacctcatgcaatg
gctcaccccaggataccagcagatcacctcacaggggtcaagcatatccccggggtcccc
aggggctctccagtttatccccaaccacaaccccgtgacgtatatgacattcgtccccca
cctgcctctcagtatgagccgccacagtacccaggaggttatccctaccaacagccaaca
cagtatgtccgggaatacatccgtaacccccctccgccgagtgagtcaggacccccttac
catgacccttacagcggctacagcactccggaccgcccctacccctcccagcactctggc
ccaccttttccctactcccacccatctcactatgacagaggtcaccacagtacctacaac
gtccctcccccgccccctcagccttatccgtctcagagggatcccctcgatgtcccgccc
ccctcagcggggcaggccaactctctctaccaccaagaagcgagttcccgggacagatac
gccccagacggctactatcctccgggttcccagcctccacctatgaggacctacgtcagg
gggtcacaatacagcggttcacagcccagcctggactatctccaccgacgacggcaggaa
ctgttatctcagctggcagaaaggaaggtgatctctcctccaccatttgctgcctccccc
actctttcacatcccttccccagcgactacccccctgagtatggcgacgagagctccaaa
acgatgaaatgcagagagcccgactacacggggcagtactcgccctggtcctgcgaaacc
attggctcttatattaactcaaaggatgccaaacctaagaaccttatggctcctggtagc
atggagatgatgaatgtggacgataaaggtcagagggagccatcattggaggcccctcgc
aggggaacagaagtgaaagatgatgaccctattataccttttggcccccagcccactgtg
tcacgctttggcgccatctcccgcacttcaaagactggctatcagaccactggcccagtg
caagctatggcttccactcttcagaaccccaactctaaacacatgaccatgcctgattac
tcatatggaagtcatggagcatgggctggagcttcatacccctcccaccagactgcctcc
tcctctcagggacactttgagcgccttcccatgacaaccccagatcgagaacagttaaag
attgagctgcagcaggtcaatcagcagatcactcaacagactcagatgcacaacatagag
gccgccagtaactctttgctcctgcagagggaggccagcgcattggtcgtccagcctgtg
caacccagccagggctcagcggcagtggttccacagcaaccgcagcccaaatggccagta
gggggtgccggagtgccagctgtctccaatgagcagttaagcttggagctccaccaggtg
gagagagaaattggcaagaggacccgagagatggctttgcaggaaaaccaagtagctcat
gatgttcaacagtacaaaatgcagcctgcagagaatggacaaccagagcacgagaaccag
ctggaagaaatctctctggctctcggcgaagtgtccaacggctccagcagtctgcaagaa
aatgcagtgggcgggtccatgatgtcactgaccaataagacggctggattgagcatgtgt
tctgatccagttgttgctggttcagagatgcagaagaatggcgttgtccactcctgctca
tag
DBGET
integrated database retrieval system
