Poecilia latipinna (sailfin molly): 106956793
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Entry
106956793 CDS
T08005
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai04510
Focal adhesion
plai04512
ECM-receptor interaction
plai04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106956793
04518 Integrin signaling
106956793
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106956793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plai00536
]
106956793
Glycosaminoglycan binding proteins [BR:
plai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106956793
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
106956793
NCBI-ProteinID:
XP_014903328
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MLSFMDSRTVLLLIASQVCLLAVVRCQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGGPGAKGQKGEPGDITDV
VGPRGPSGPMGPPGEQGPRGPRGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGL
GGNFAAQMTSGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGQ
SGPMGPRGPSGPPGKPGDDGEPGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGL
DGAKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGP
PGPVGPAGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGP
AGPQGAPGPQGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGP
PGASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA
RGQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAGGPPGPAGPAGERGE
QGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGTQGL
QGPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGP
EGAPGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGF
AGPPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGA
TGFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGE
KGDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSAGGPGD
RGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGA
PGPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGF
TGLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGD
SGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEV
DATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFC
NMETGESCVNPKPAKIPRKNWWSSKSKERKHVWFGEEMNGGFHFSYGDDSLAPNTASIQM
TFLRLLSTEVSQNLTYHCKNSVAYLDASLGNMKKAVLLQGSNDVEIRAEGNSRFTYSVME
DGCARHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttatagcatcccaagtttgtcta
ttagccgttgtgagatgtcaactggaagatgaccaggaggatgcttctgcctgtaggcac
gaaggacagctttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccgccaccg
tttggtggaggaccaggagccaagggtcagaagggtgaacctggagacattacagatgtt
gtaggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgagga
ccaagaggagaaaaaggagagaaggggagccccggtcctcgtggcagagatggtgaacct
ggcacccctggaaaccctggaccccccgggcctccaggacctaatggaccccctggactt
ggtggaaactttgctgctcaaatgaccagcggttttgatgagaaggccggaggcgcacag
atgggtgtgatgcaaggaccaatggggcccatgggaccgagaggaccacctgggccctca
ggatcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggacaa
tctggccccatgggtccccgtggcccctccggacctcctggaaaacccggagatgatggt
gaaccaggtaaaccagggaaaccaggtgaccgtggacccaccggacctcagggagctcgt
ggtttcccaggaactcctggtctgccaggcatcaagggacacagaggttatccaggtctt
gacggtgcaaagggagaaactggtgctgttggtgcgaagggtgaggccggtgctcccggt
gagagcggcgctcctggacccatgggacctcgtggtttgcctggggagagaggacgtccc
ggatccactggagctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcct
ccaggccctgttggtccagctggagctccaggcttccccggatctcctggtacaaagggt
gaagctggtcctactggcgctcgtggtcccgaaggagcccaggggccccgtggagagtca
ggcactcctggatcacctggaccctctggtgcttctggtaaccctggcactgatggtatc
cctggagctaaaggttcagcaggtgctccaggtatcgcaggtgctcctggttttcctgga
cctcgtgggcctcctggacctcagggagcaactggacctcttgggccaaaaggaacatct
ggagatccaggaatccccggattcaagggggaagcgggaccaaagggagaaattggacca
gctggacctcagggagcccctggccctcaaggagaagaaggcaagagaggacccagaggt
gagcctggttctgctggacctcttggacctccaggagaaagaggagctcctggcaaccgt
ggtttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgcggaccc
cctggggccagcggtgccaaaggagccactggtgaccctggccgtcctggagagcctggt
cttcctggtgcaaggggtctgactggtcgtcctggtgatgctggacctcagggcaaagtt
gggccttctggagctccaggtgaggacggacgtccaggaccccccggccctcagggagcc
agaggacagcctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggc
aaatctggtgagaaaggactggctggagctcctggtctgagaggtctgcccggaaaagat
ggagaaacgggcgcgggtggaccccctggccctgctggccccgctggggagagaggagag
caaggacagcctggtccctctggtttccagggtcttccaggacctcctggccctcccggt
gagggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccact
ggacccagaggagagcgtggttttccgggagagagaggagctgctggaacgcaaggtttg
cagggacccagaggtcttcctgggactcctggaactgacggtcccaagggagccattgga
cctgctggaggtccaggagctcagggtccaccaggcctgcagggtatgccaggagagaga
ggagctgctggcattcctggacccaaaggagacaggggtgatgttggagagaaaggacct
gaaggtgctcctggcaaagatggcgccagaggtcttactggtccaattggtcctcctggt
cctggtggtccaaatggcgagaagggtgaatctggacctgctggaccatctggacctgct
ggtgttcgtggtgcacctggagacagaggagagactggacctcctgggcctgctgggttt
gctggacctcctggagccgatggtcagcctggaaccaaaggagagcagggagaagcagga
cagaagggagatgctggagcccctggaccccaaggaccatccggtgcccctggcccttcg
ggtcctacaggtgtttctggacctaaaggtgctcgtggtgcccagggtcctcctggtgcc
actggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctgga
cccgcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggt
ggacctccaggcagacagggtgacgctggactacgcggtcctgcaggagctccaggagag
aagggcgaccctggagaggacggtccccctggtccgctaggtccctcgggtcctcaggga
ttggctggtcagcgcggtattgttggtctacccgggcagagaggtgaaaggggtttccct
ggtttgcctgggccttctggcgagcctggaaagcagggttctgctggtggtcctggagac
cgtggaccgcctggaccagtcggacctcctgggctcactggtcctgctggagaacctggt
agagagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaag
ggtgaccgtggcaacaccggtcctgctggtgctcctggtgctccaggtgctcctggggct
cccggcccagtcggtcccactggaaaacagggagacagaggggagtctggtgcccaagga
ccagctggacctccaggacctgccggtgccagaggaatgcctggaccccaaggcccccgt
ggtgataagggtgaagctggagagtctggtgagagaggtcagaaggggcacagaggtttc
accggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactgga
cctgctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaagac
gggtcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgtactggagac
tctggtcccgctggtcctcctggaaaccctggaccccctggtcctcccggtcctcccggt
cctggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgatccc
ctgaggtacatgagggcagaccaggccgcagggaatctccgtcaacatgacgcagaggtc
gatgccaccctcaagtccctcaacaaccagattgagaacatccgcagcccagagggatcc
aagaaaaaccctgcccgcacctgtagagacctgaagctctgccatcccgactggaagagc
ggtgagtactggattgatccaaatcagggctgcactgtagatgcaatcaaagttttctgc
aacatggagactggggagtcctgtgtgaaccccaaacctgccaagatcccacgcaagaac
tggtggtccagcaagagcaaagaacgcaaacatgtctggttcggagaggaaatgaacgga
ggattccatttcagttacggtgacgacagcctggcacccaacaccgcctccattcagatg
actttcctgaggttgctgtcaacagaggtttcccaaaatctcacttaccactgtaagaac
agcgtggcctacctggatgcttcactaggcaacatgaagaaggccgtcctgctgcaaggc
tccaacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaa
gacggctgtgcgagacacacaggacagtggggtaagacagttttcgaatacaggtcgcag
aaaacctcccgtctgcccatcgtggacattgcccccatggatatcggtggagcagaccag
gagtttggagttgatattgggccagtttgcttcttgtaa
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