Poecilia latipinna (sailfin molly): 106959228
Help
Entry
106959228 CDS
T08005
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106959228 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plai03019
]
106959228 (parn)
Enzymes [BR:
plai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106959228 (parn)
Messenger RNA biogenesis [BR:
plai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106959228 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
106959228
NCBI-ProteinID:
XP_014907141
Ensembl:
ENSPLAG00000006395
UniProt:
A0A3B3VAZ1
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MEVTRQNFKDCLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFRYDSAKSKYITKPFNFYVFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFGHGIPYLNQDEEAQLREQTEERRNQHANGLGTPSFISPSSSKVPAHVPDEQKD
FINKVVEKVERLFNGNEKTLNLDPCTGFQRKLIYQTLSWKFPKGLHVETLETEKKERFIQ
ISKVDEEERKRREQQKLEKEQEELNNAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEDLQDFKEVAMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQVKETPFKPPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANHLGSFLMPPISYISPRSKLVEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYKIQTYADYIQGKQQEKEKLGQPAKTWGDDSWVKPHY
PSSTTSAGFGFSRRKRSISPTQGEQGGDDGACGDGWNHYSFPDGTGSKKIRYDDVGGQAS
VEAVESKTSEGWLKMTNSSYLAEPSPVPDAKSPEGADSGSYADGTATWHQTPKVPGRKGQ
KSKKKKSDASDSTTSLFEVPEVW
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacacgacaaaattttaaagactgtttaagcacagtgtacagcgccatagag
gaggctgactttcttgccatcgatggagaattttcaggtataagcgacggtcctaatgtc
agtgcattgaccaacgggctggatacacctgaagagagatacacgaagctgaaaaagcat
tccatggactttctcatgttccagtttggcttgtgtacattcagatacgactctgccaag
tcgaagtacattacgaagccttttaacttttatgttttcccgaaaccattcagtcggacg
tctcctgacataaagttcatctgtcaaagttccagcattgacttcctggcgagccaggga
tttgacttcaacaaggtgtttggtcatggaatcccgtacctaaatcaagacgaggaagct
cagctgagagagcagacggaggaacggagaaaccagcacgccaacggtctcgggacgcct
tcctttatctccccgtcatcctccaaagtccctgcacacgtaccagacgaacagaaagac
ttcatcaacaaagtggtagagaaagtcgagaggcttttcaacggaaacgagaaaactctg
aacttggacccatgtacaggattccagagaaagctgatataccagacactgagctggaag
tttcccaaaggccttcatgtagaaacattggaaacagaaaagaaggagcgcttcattcag
atcagtaaagttgacgaggaggagaggaagaggagggagcaacagaaactggagaaggag
caggaggagctcaataacgctgttggcttctccagggttatccatgccatttctaaatct
ggtaaactggtggttggccacaatatgcttctggatgtgatgcacaccatccaccagttc
tactgtccgctgccagaggaccttcaagactttaaagaagttgcaatgtgtgttttccca
agacttctagacacaaagctgatggcctccactcagccatttaaggagctgatcaacaac
acgtctctggcagagctcgaaaaacaagtgaaagaaactccgttcaagccaccgcaagtt
gaaaccgccgaggggttccctagctacgacacggcccaggagcagctccacgaggccgga
tacgacgcttacatcaccggcctgtgtttcatctccatggccaaccacctgggttctttc
ctgatgccgccgatatcttacatctccccccgatcgaaactagttgaacctttcttcaac
aagctctttctgatgcggattatcgacataccctacctcaacatcaccggaccagatttg
cagccgaagagagaccatgtcctgtacgtgaccttccccaaggagtggaagacgagtgac
ctctaccagctcttcagtgcctttggtaacatccaggtgtcgtggatagacgacacctca
gcctttgtctctctaagtcagacggaccaggtgcagatcgctatgaacaccagccgctac
gcagagagctacaagatccagacgtacgcagactacatccaggggaaacagcaggagaag
gagaagctcggccagccagctaaaacctggggggatgacagctgggtgaagcctcactac
ccgtcctccactacgtctgctgggtttgggttctccaggaggaaacgcagcatcagtccc
actcagggggagcagggaggcgacgacggcgcatgtggggatggctggaaccactactca
ttcccagacggcactggcagcaaaaagatcagatatgatgatgttggcgggcaggcgagc
gttgaagctgtggagagcaagacatcagaaggctggctgaagatgacaaattcttcatat
ttggccgaaccaagtccagtcccagatgctaaaagtccagaaggtgccgactcgggcagc
tatgctgatgggacggctacgtggcaccaaaccccaaaagttccaggaaggaaaggtcaa
aaaagcaagaagaagaaatctgacgcgtcagattctacaacctccctgttcgaagtccca
gaagtctggtag
DBGET
integrated database retrieval system
