Poecilia latipinna (sailfin molly): 106960405
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Entry
106960405 CDS
T08005
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106960405 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plai03021
]
106960405 (pcf11)
03019 Messenger RNA biogenesis [BR:
plai03019
]
106960405 (pcf11)
Transcription machinery [BR:
plai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106960405 (pcf11)
Messenger RNA biogenesis [BR:
plai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106960405 (pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
SHOCT
Motif
Other DBs
NCBI-GeneID:
106960405
NCBI-ProteinID:
XP_014908979
Ensembl:
ENSPLAG00000015390
LinkDB
All DBs
Position
Unknown
AA seq
1562 aa
AA seq
DB search
MDCLLLRGNAIGPAAVAWFGCRSWKMEDQTAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENIQFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLIASFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSLDTAWPIKPLPHNFNSTSSIHVN
PRFLKQPEEKAQTQPVPAKPAPVAPAPPPPPQAVPQTAPAGLTQEQLIRQQLLAKQKQLL
ELQQKKIELELEQTKAQLAGQGGLVLPPPIGSVPAESSPSQRPGQQVPPPIRPWIPPQPP
ADPKLSTRDPRLNRSGPPTAPQPAAKRQSPHPPGASAAPAEKRAPEKPPRQEKNRPPRKD
PPEEKLKSKSPSPLARGLQSRSKQAEAETPKPAEAPRKDPRLKKRLSEKPAEAKDDDVKE
KKRCVDKKERDDAPRRAEPPRSNKTKPLNGLAPKHDHLEPADKPDPKPGTATTRRKRTHS
RSRSRSPTSSPKRKDRRSPKSHARSGSLSPSHKAGKPRRVRGDDTPHGKPGRDDRPGAKK
AQSDSRRPKRLQEERRSESRDSHSPRGHDGVKEAKDSQHRWRSGWEENKHTKQPEDSHTK
SGPPRHKPHGTPTRPGTPRNQKIRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEISQ
EDFLNMAHQIKHFFQYQEEKQQRSENWDESGDFSMKKPSIPRPHDTMDAAELSYYEHKSK
LRKTQVNHRVTGEEGHETPEDVGEPRPGEKLGGRSGGHPYGRPGERRSKEREEVRTPLAP
MVEEYNHGKEFPKLKGLRFRRRDRPGESSEREWTSPLTERQLYDDEHKSGYDAPRRYGPA
DTRRQDGPSPVTGGRRNSPGPASLEAPPPRFERERLSPLHQKDSADMSPVPRFESPNSEH
SDEGPLDAPVPHLTSLKGPPRGGPLSGVRHSDSPGHTPPHEGGHPPSRYSGPGHMGPSRP
HRPGWYEGGGPGRFEEPQFEGSHHPGPGRFEGPAHHNMAERTEGSGPCEGLRMAMRGGGD
GPFDGPPQGPSRFGGPVGQQQSVRFEGQMGGPGHLEGPMQRFDGPGPFNNMGPGPMGFQQ
QRPLRFEGPTNQMGPMRFDGPSRFEGPGPGPRFDLPGGPHQAGPHQPGPPRFDYAPGQQG
PPRFPPQHNIQLPMQPMAPPLYDGPMGPQQSFGMAPQRFPEPMNPQFTPGPNMLPAANFN
MQPVPFSQPGPGPFYNPAAPAISMQQPGSMMGNLNQPYLPQNPVPFGQQAAQAAPAENHF
GQLDVNDLLSKLIFNGIIKPPSQAESSQTASEASSTTTAPTPAVEEEEEEDPEVEEDEDL
PDLTSFSIDSMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVA
SKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRAT
KDQVGESCEICQEPFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKKTSSYLDATPSP
SRLLAEHPLGAFVKTEEEEAETSCQVTSCQIKQEVEADITVSGQEEPDSEAPADSARSED
TA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctgctacgtggtaatgctattggtccggctgctgtagcttggttcggg
tgtcggagctggaagatggaggaccagacggcccgggaagacgcctgcagggagtaccag
tcctcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctcaccatccta
gccgaagagaacatccagttcgccaaggatatcgtggctattattgaagctcaaatcagc
aaggcgccggccgctgagaagctcccagttttgtacttagtggactccatagtgaagaac
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcgcttcatttatttgtgtc
tttgaaaaggtggatgagaacaccaggaagagcctgttcaagcttcgctccacctgggat
gacgtctttccgctcaagaagctctatgccctggacgtccgggtcaattctctggacacg
gcctggcctatcaagccgctgccgcacaacttcaactccacctccagcatccatgtcaat
cccaggttcctcaagcagcctgaggaaaaggcccaaacgcaaccggtcccggccaagccg
gcgccggtggccccagcccctccaccacctccccaggcggtcccccagacagccccggcc
gggctgacccaggagcagctgatccggcagcagctgctggccaaacagaagcagctgctg
gagctgcaacagaagaagatcgagctggagctggagcagacgaaggcccagctggcagga
cagggtggcctggtgctgccaccacctatcgggtcagttccggccgagtcaagcccgtct
cagagaccgggtcagcaggttcctccacccatccggccctggatacccccacagcctcct
gccgaccccaagctgtccaccagagacccccgtttgaaccgtagtggacctcccactgca
ccccagccggctgccaagcggcagagcccgcacccccccggggcgtcagcggcccctgcc
gagaagagggcaccagagaaacccccccggcaggaaaaaaatcggccccccaggaaggac
ccaccagaggagaagctgaagtccaagtctccgtctccgctggccagaggcctacagagc
aggagcaaacaggcagaggcggagacacccaaacccgccgaggcccctaggaaggaccct
cggctgaagaagcgtctgtcggagaagccagccgaggccaaggacgacgacgtgaaggaa
aagaagcgctgcgtggacaagaaggagcgggacgatgcgccgcggagagccgagccaccc
aggtccaacaagaccaagcctctgaacggactggcgcccaaacacgaccatctggagccc
gccgacaagcccgacccaaagcctggcaccgccactacccgcaggaagcgcacacattcc
cggtcccgctcacgatcacccaccagctcccccaagaggaaggaccgccgctctcccaag
agccatgcccgcagcggctccctgtcaccatcccacaaggctgggaaacctcggagggtc
cgtggtgacgacaccccccacggcaagccaggccgagatgaccggcccggcgccaagaag
gcccagtcggacagcaggaggccaaaaaggctgcaggaggagcgccgctccgaatccagg
gactcccactccccacgaggtcacgacggggtcaaggaggccaaggattcacagcatcgc
tggaggagtggctgggaggagaacaaacacacaaagcagcctgaggactcccacaccaag
tctggacccccccgacacaaaccccatggcaccccgacccggcctggcacccctaggaac
cagaagatccgtctcagcgttgacgccaacctacagattcctgaagtcctcaactccgcc
tccaagaaggacctgctgaggagggccagcaagcgtctggagagcggagagatttcccag
gaggacttcctgaacatggcacaccagatcaaacacttcttccagtaccaggaggagaag
cagcagcgctcggagaactgggacgagtccggagacttctccatgaagaagccgtccatt
ccccgcccccatgacacaatggacgcagctgagctgtcctactacgagcacaagtccaag
ctgaggaagactcaggtcaaccacagagtcacaggcgaggaaggccacgagactccggag
gatgttggggagccgagaccaggagagaaactgggaggacggagcggtggacacccatac
ggacggccaggtgaacggaggagcaaggagcgagaggaggtgcggacccctctggccccc
atggtggaggagtacaaccacgggaaagagttccccaagctgaaggggctccgcttccgc
aggagggaccgccctggagagtccagtgagcgggagtggacgtcgccactgacggagcga
cagctctacgacgacgagcacaagagtggctatgacgccccgcggagatacggccctgct
gacacacgccggcaggacgggccctcccccgtcactgggggccgcaggaactcccccggg
ccagccagtctggaggctccaccccctcgatttgagcgggagcgcctgtcgcctttacat
cagaaagactcagcagacatgagtccggttcctcgctttgaaagtcccaacagcgagcac
tctgacgaggggcccttggatgcccccgttcctcacctcaccagtctgaaggggcctccc
cgcggagggcctctgtctggggtccgacacagcgactccccagggcacacaccgccccat
gaaggaggacatcccccctcgcgctacagtggccctgggcacatgggcccctccagaccg
caccggcccggctggtatgaaggtggtggccccggccgtttcgaggagccgcagtttgag
ggctcccaccaccctggccccggcagatttgagggccctgcgcaccataatatggcagag
aggactgagggctccgggccctgtgagggtctccgcatggccatgagaggaggaggagat
gggccgttcgatgggcccccccagggccccagcaggtttggaggccctgtaggccagcag
cagtcggtcaggtttgagggacagatgggggggcctggtcacttggagggccccatgcag
cgtttcgatgggccagggcccttcaacaacatgggtcctggcccaatgggcttccagcaa
cagcggcccctccgctttgagggccccactaaccaaatgggtccaatgagatttgacggc
cccagtcgctttgagggccctggaccaggccccaggtttgatctgcctgggggcccccac
caagcgggacctcatcaacctgggcccccacgctttgactatgctcctggccagcagggt
ccgcccaggttccccccccagcacaacatccagctgcccatgcagccgatggccccgccc
ctctatgacggccccatgggcccccagcagagcttcggcatggccccccagcggttccca
gaacccatgaaccctcagttcacccccggccccaacatgctgccggcagcaaacttcaac
atgcagccggtcccgttcagccagccaggccccgggcccttctacaaccctgcagctccc
gccatcagcatgcagcagccgggctccatgatggggaacctgaaccagccctacctgcct
cagaacccagtgcctttcggacagcaggctgcgcaggcggctcctgcagagaaccacttc
ggtcagctggacgtcaacgaccttctgtccaagctcatcttcaacggcatcatcaagccg
ccgtcacaggctgagtcttcgcagaccgccagcgaggcatcgtccacgacaactgccccg
actccagctgtggaggaggaggaagaggaggacccggaggtggaggaggatgaagacctg
ccggatctgaccagcttcagcatcgacagcatgaagcagcgctatgagagcgtggtgacc
aagctgtactcagggaaccagtgctgcctctgcagcatgcgcttcacggcggcgcagacc
gacctgtatgctgaccacctggactggcacttcaggcagaaccatgccggcaaggtcgcc
agcaagaaggtcacacatcgccgctggtactacagcctgacggactggatcgagtttgag
gagatcgccgacctggaggagcgtgcaaagagccagttctttgagaaggagaacgaggag
gaggtccagaagaatcaggcggccgccaaggagaaggagttccagagcgtccgcgccacc
aaggaccaagtgggagagtcgtgtgaaatctgccaggagccgtttgagacgtactgggtg
gaggaagaggaggactggttcctgaagaacgctgtcagagtggatgacaagaacttccac
ccggcctgcttcgaggactataagaagacgtcgtcctacctggacgcaacgccgtccccc
agtcggctgctggccgaacacccactgggcgcattcgtcaagaccgaggaagaggaggcc
gagacttcctgtcaggtcacttcctgtcagatcaaacaggaagtagaggctgacatcact
gtttctggtcaggaggaaccagactctgaggcgccggcggactcagcccggtccgaggac
acggcttga
DBGET
integrated database retrieval system
