Poecilia latipinna (sailfin molly): 106962486
Help
Entry
106962486 CDS
T08005
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106962486 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plai00536
]
106962486 (col11a1)
Glycosaminoglycan binding proteins [BR:
plai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106962486 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
106962486
NCBI-ProteinID:
XP_014912414
LinkDB
All DBs
Position
Unknown
AA seq
1623 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTRTAFITLTLLLQAACVRAAEPVDVLKALGFQNYPEGVTKV
TGFCANRRASKSDSAYRIARQIQISAPTSQLFPGGVFPEDFSILTTLRPESGLQSFLLSI
YNEQGVQQLGVEVGRSPAFLYEDQTGKPAPEDYPLFTSLNLSNGKWRRVAISVEKKTVTI
IVDCMRKITKPLLRSNQGSISTSGITVFGTRILDEDVFQGDIQQLLIVADPKAAYDYCDH
YSPDCDTPHRDSLQAQAPDEEYITDDIDYRQFYEYSEGPTVSVPTDEYSEKQLNNVEGDY
YTDNDYGTLDGTQTQSPLATSGPSEAVKEDFIGAHVTEAPTLEPGTVLETGDNSETGAEA
YDFKEYDLNEYDLGKLDNKYDYGTYDEYGPLPSKAPTAYDEEVGPGVAAETDFSESTVAG
SQAAFGQKGEKGEPAVIEPGMLIEGPPGPPGPSGLPGPSGLQGPPGPAGDPGDRGPPGRA
GLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLT
GRSGPVGPPGSGGLKGESGDPGPQGPRGIQGPPGQPGKVGKRGRAGADGARGMPGEPGSK
GDRGFDGLPGLPGEKGHRGEPGPMGPAGAPGEDGQRGEDGEIGPRGLAGESGPRGLLGPR
GPPGPPGVPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQ
GRSGLPGLPGADGPPGHPGKEGPPGEKGSQGPLGPQGPLGYPGPRGVKGADGVRGLKGSK
GEKGEDGFPGFKGDMGIKGDRGEIGMPGSRGEDGPEGPKGRAGPNGESGPLGPAGEKGKL
GVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGARGARGLT
GKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ
GKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSP
GKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGNAGPAGPIGLSGRP
GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEGGEPGQK
GSKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPGPI
GLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQ
GEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDP
GPPGEPGVAGIDGEAGEKGEDGEPGQPGPPGPSGEAGPPGPPGKRGPPGALGAEGRQGEK
GAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGASGQDGPPGPMGPP
GLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGAAGPL
GPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGSIGPPGPPGPPGEVIQPLPIQSPKKTKRS
SDMQSDAAGTFSDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFP
DGE
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaacggtggtccacaaggtggaaaacgaaacgttggctcatggattccact
agaactgcattcatcactttaacactgcttctgcaggctgcttgtgtcagagcagcagag
ccagtggacgtcttaaaagcgttaggatttcaaaattaccccgaaggagtgacaaaagta
acaggattttgtgcaaaccgaagagcatcgaagtcagactcagcctacagaatcgccagg
cagatccagatcagcgcccccacctcacagttattccctggtggcgtttttcctgaggat
ttctccatcctgaccaccctgcgccccgagtctggcctccagtccttcttgctgtccatt
tacaatgagcaaggagttcagcagctgggtgtagaggtaggacgctcacctgctttcctg
tatgaggatcaaaccggcaagccagccccggaggactaccctctgttcacctctctcaac
ctttctaatggaaagtggcgtcgggtagccatcagtgttgagaagaagacggtcaccatc
attgtggattgtatgaggaagatcaccaagcctctgctcaggagtaaccaaggctccatc
agcaccagcggcattacagtgtttggcaccaggatcctggatgaggatgttttccagggg
gacatccagcagctcctgattgttgctgatcccaaagcagcgtatgactactgtgaccat
tacagcccagactgtgacacaccacacagggattcgcttcaggcccaggcgccggacgaa
gagtacattactgacgatatagattacagacagttctatgaatactctgaaggaccaaca
gtctccgtccccactgacgaatactctgaaaaacagctaaacaatgtagagggagattac
tatacagacaatgactacgggactctagatggtactcagactcagtcgcctcttgccacg
agcggaccaagtgaggctgtaaaggaggattttatcggggcgcacgtcaccgaagcccct
actctggagcccggcaccgtgttggaaacaggggacaactcggagaccggtgcggaagca
tatgactttaaggagtatgacctgaacgagtatgacttgggcaagttagacaacaagtat
gactatgggacatacgacgagtacggccccctcccgtctaaagccccgacagcctatgat
gaggaagtggggcctggggttgcagccgaaaccgacttttctgaaagtacagttgctggt
tcacaagcagccttcggacagaagggcgagaagggcgagccggctgtgatcgaacctggc
atgctgattgagggaccaccaggaccacctggcccatcaggtcttccgggaccatcaggc
cttcagggacccccgggccctgctggagatcctggtgacagaggtcctcccggccgcgcc
ggtctccccggcgccgacggcttaccgggacctccaggtaccatgctgatgctcccattt
cgtttcggtggggacggcgagaagggtccggtggtgtcggcccaagaagcccaagcacag
gccatcctctcccaggccaggctggcgatgcggggacctcctgggccgatgggtttgact
ggaagatctggaccggtgggtccacctggctcaggtgggctgaagggtgaaagcggagac
cccggtcctcagggcccacgtggcattcaaggaccccctggacaacctggcaaagttggt
aaaaggggtcgggctggtgctgacggcgctcgtggaatgcccggagagccaggctctaag
ggtgaccgaggctttgatggacttcccgggctgcctggagaaaagggccacaggggtgag
ccggggccgatgggaccagcaggagccccaggagaggatggacagagaggtgaagacgga
gagattgggcccagagggttagctggagagagcgggcccagaggtctgctgggacctcgc
ggtcctccaggaccccccggagtgccgggcgttgctggagtggacgggccaccgggtccc
aaaggcaacatgggaccacaaggggaaccgggtccaccgggtcagcagggaatccctgga
acacagggtctcccaggtcctcaaggtccgatcggaccacctggagaaaaaggacctcag
ggcaggtcgggacttcctggattgcctggagctgacgggcctcctggtcatcctggcaag
gagggtccacctggggagaaaggttctcagggtccactgggtcctcagggtcctctcggt
tatcctggcccccggggtgtgaagggggccgacggagttcgtgggctgaagggatcaaaa
ggagagaagggcgaggacggtttcccaggttttaaaggagacatgggaatcaaaggtgac
cggggtgaaattggcatgcctgggtcccgtggagaggacggtcctgagggacctaaaggc
agagctggccccaacggagagtcggggcctctcggtccagcaggagagaaaggtaaactt
ggtgtcccaggattgccaggttatcccggacgacagggaccaaagggctcgagtggattc
cctggcttccctggagccaacggcgagaaaggagcacggggcattgctgggaaacctggt
cccagaggacaaagaggtccaacggggcctcgtggtgctcgaggagccagaggtctaacg
ggcaaacccggtcccaagggaacagcaggaaacgacggcccccctggcccgcctggcgag
agaggacctcaaggacctcaggggccagtgggcttccctggaccaaagggcccccctgga
ccacctggaaaggacgggcttcccggacaccctggacagcgtggagagacgggtttccaa
ggaaaaactggcccaccaggaccaggaggtgttgtcgggcctcagggacccactggagag
accggtcctgttggtgagcgaggccatcctggacccccaggcccacctggagagcagggt
cttcctggtgctgctggcaaggagggagccaagggtgatcctggaccacaaggctcccct
ggtaaagacggtccgccgggccttcgtggcttccccggagagagaggtctacccggtgcc
acgggcccagctggtctgaagggcggagagggaccccaaggtccacccggtcctgttggt
tctcctggtgagagaggtaatgctggtccagccggcccaattggtttatctggtagacct
ggtcctcagggtcctccaggtcctgctggagagaaaggtgctcctggggagaaagggccg
cagggcccggccggccgtgacggtgtccagggtcctgtcggtcttcctggccctgctgga
cctcaaggcccacctggagaggacggagacaagggagagggtggggagccgggccagaaa
ggaagcaaaggagacaagggagagcagggccccccgggaccggctggcgttcaaggtccc
gttggagccccaggtcctgctggagctgatggagagccaggtcccagaggtcagcagggc
atgttcgggcagaagggagacgagggtccgagaggcttccctggacccccgggtcccatc
ggtctacaggggcttcccggacctccaggtgaaaaaggagaaaacggtgacgttgggccc
atgggtcctcctggtccccctggtcccagaggccctcagggtcccagtggagccgatggt
cctcaaggtcctccaggaggtgtgggccccatgggatctgtgggtgagaagggcgaacaa
ggggaggctggaaacccgggaccacctggagagcctggaactgggggacccaaaggtgag
agaggagagaaaggagaggccggaccccccggagctgctggacccgccggtgccaaagga
ccccctggagacgatggtccaaagggcaaccctggacctgttgggttccctggagaccca
ggaccccccggagagccaggtgtcgctggtattgatggagaagcaggagagaaaggagag
gatggtgagcccggtcaacctggacccccgggtccttctggagaggccggtccacctggc
ccacctggcaagagaggacctcctggagctttaggagccgagggccggcaaggagagaag
ggcgccaagggtgaagcgggcgctgagggcccagctggtaaaacaggacccgttggaccc
caaggacctcctggaaagcccggtccagagggtctgcgtggaatccctggccctgtgggt
gaacaagggctgcccggtgcttcaggacaggacggtccaccaggtccgatgggtccacca
ggtctgccaggcttgaaaggcgaccccggctccaaaggtgaaaagggtcacccaggtttg
atcggcttgattggaccccctggagagcaaggagagaagggagatcgaggtcttcccgga
ccccagggcactcccggtggcaaaggtgactctggtatcagtggagctgctggtcccctt
ggtccccctgggccccctggtctacctggccctcaaggtccgaaaggagccaagggttca
agtggtcccgctggtccaaaaggagacactggttcaataggtcctccaggtcctcctggc
ccaccgggtgaggtcatccagccccttcccattcagtcgcccaagaagaccaagcgctcc
agtgacatgcagtcggacgccgccggcaccttttcggattacggcgaaggcatggaggac
atctttggctctctcaacaacctcaaacaggacatagaacggatgaaataccccatgggc
acgcaaaacaacccggccagaacatgcaaagacctccagctgtgccaccccgagttcccc
gacggtgagtaa
DBGET
integrated database retrieval system
