Poecilia latipinna (sailfin molly): 106964812
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Entry
106964812 CDS
T08005
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
plai
Poecilia latipinna (sailfin molly)
Pathway
plai04510
Focal adhesion
plai04512
ECM-receptor interaction
plai04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
plai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106964812
04518 Integrin signaling
106964812
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106964812
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plai00536
]
106964812
Glycosaminoglycan binding proteins [BR:
plai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106964812
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
106964812
NCBI-ProteinID:
XP_014916011
Ensembl:
ENSPLAG00000003014
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADATAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGMRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMSQGFDEKAGTASMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGPAGPIG
PRGPPGPSGKPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGETGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPQG
APGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDTGPQGKVGASGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQPG
PPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGELGEPGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPAGPPGEKGEQG
PTGEPGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRGPPG
PVGPPGLTGPAGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTGLQG
LPGPPGPAGDAGPAGPAGSSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDSTIK
SLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKDRKHIWFGEAMNGGFHFSYAQEGPAASAANVQLTFLRL
LSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcagcaagaagatgaccaggaggcaggcggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgc
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gaggcgtttggtgccaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcaggggatgcgtggagaagct
ggcgcaaagggtgacaagggaaatcctggaccaagaggaagagatggcgaacccggcaca
cctggaaaccccggaccacctggaccacccggcccaccagggctgggagggaactttgct
gctcagatgtctcaaggctttgatgaaaaggctggaactgcttcaatgggtgtgatgcaa
ggaccaatgggccccatgggtccccgtggcccccctggacctagcggagctcctgggcct
cagggtttccaaggagcacctggagagactggagagcccggtccagctggaccgattgga
cctcgtgggccacccgggccatctggaaaaccaggaagtgacggtgatcctggaaaacct
ggcaaacccggtgagcgcggacctgcagggcctcagggagctcgtggattccctgggaca
cctggacttcctggaatcaaaggacacagaggtcacccaggtctggatggagcaaaggga
gagactggtgcagctggagccaagggtgagactggtgctgctggagaaagcggcagtaat
gggcctatgggccctcggggtctacctggtgagaggggacgtcctggagcttctggagct
gcaggagcccgtggaaacgatggcttgcctggtccagctggtcccccgggcccagttggt
cctgctggagctccaggtttcccaggatccccaggctccaagggtgaagcgggtcctaca
ggcgcccgtggagctgaaggagcacagggaccccgcggagaggccggcacgccaggatca
cctggaccagctggggcggggggtaaccccggcactgatggtattcctggggctaaaggt
tctgctggggctcctggaattgctggcgcacctggcttccccggcccccgaggcccacct
ggacctcagggagcaactggacctcttgggcccaaaggacaatctggagatccgggtctt
ccaggactgaagggtgaatctggaccaaaaggagagctgggcccggctgggcctcaaggg
gctcctggccctgctggagaagaagggaagcggggtgcgaggggagagccgggaactgct
ggaccaaacggacctccaggagaaagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggagcccctggtgaccgtggcgtccctggtgctgctggg
cctaaaggtgccactggagaccccggacgtacaggcgaggctggcctcccaggagccaga
ggtcttactggtcgtcctggagatactgggccgcagggcaaagttggagcttctggcgct
ccaggtgaggacgggcgtcccggtccacctggtcccctgggcgcacgcggacagcccgga
gtcatgggattccccggaccaaaaggagcaaatggtgaacctggaaaaccaggagagaag
ggactcgttggtcgacctggtctgagaggactacctggaaaagatggtgagactggtcct
tctggacctcctggacctgctgggcctgctggagagagaggagagcaaggacagcctgga
cctcctggcttccagggtctgcctggtccaactggttccccaggagagggtggaaaacct
ggagatcagggtgttcctggagagggtggagctcctggcgctgttggacccagaggtgag
cgtggtttccctggtgagcgcggtagcgctgggcctcagggtcttcaaggaccgcgcgga
cttcctgggacaccaggaagtgacggacccaagggagcaattggaccagctggagctctt
ggagctcaagggcccccgggcctgcagggtatgcctggagagagaggagctggaggcatc
ccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggcgctcctgga
aaagacggtggtagaggtttgactggtcccattggtccccctggcccatctggacccaac
ggtgccaagggtgagactggaccaactggtccttctggtgctcctggggttcgtggtgct
cctggtgaccgcggtgagcttggtcctcctgggcctgcgggcttcgctggacctcctggt
gcagatggtcagccaggtgctaagggagagctaggtgagcccggacagaagggagaagct
ggtgcttcgggacctcaggggccctccggagctcctggacctgtgggacctactggcgta
tctggacctaagggagcacgcggtgcccagggagcgcctggagcaacaggtttccctggt
gctgctggcagagttggacctcctggtcccaatggtaaccctggcgctgccggtcctgct
ggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcctccaggacgg
ccaggagacgctgggcttcgtggaccagctggacctccaggagagaagggagagcaagga
ccgacgggagagcctggagctgatggcccttcagggccgcagggtttggctggaggtcgt
ggtattgttgggctgcccggtcagcgcggtgagagaggtttccctgggctccctggacct
tctggagagcctggtaaacagggagcatccggtggtgctggtgaccgaggaccgcctgga
cccgttgggcctcctggactcactggacctgctggagagccaggcagagagggcacacct
ggatcagatggacctcctggtagagatggagctgctggagtcaagggagagcgaggtaac
accggtcctgcaggcgctcccggagctccaggcgcccctggggctcccgggccggttggg
cccctcggcaaacagggagacagaggagaggctggcgctcaaggacctgcaggaccacca
ggactggctggcgctagaggaattgctggaccccaaggaccacgtggagataagggggag
gcgggtgagtctggagagagaggtcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctccaggtcctgctggagatgccggacctgctggacctgctggatcaagc
ggcgctaagggaccccctggtccacttggacctgctggcaaagacggatctaatggacag
cctggtcccattggaccccccggacctcgaggacgctctggagaaactggtcctgctggt
cctcctgggaaccccggcccccctggtcctcctggcccaccaggtccaggcattgacatc
tccgccttcgctggcctgggccagactgagaagtctcctgatcctctcaggtacatgagg
gctgacgaggcctccagctccctgaggcagcatgacattgaggtcgattccacaatcaag
tccctcaacacccagattgagaacttgcgcagccctgacggtacccagaagaacccggct
cgctcttgcagtgacctaaagctgtgccaccccgagtggaagagcggtgactattgggtg
gatcctaacctcggaagcacagccgatgcaatcaaggtcttctgcaacatggagacagga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggagaggcaatgaatggcggattccatttcagc
tatgctcaggaaggtcctgctgccagcgctgccaacgtccagctgaccttcttgagactt
ctgtccactgaagcgtcccagaacttcacttatcactgcaagaacagcattgcctacatg
gatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaacgacgtggag
atccgcgcagagggcaacagtcgcttcacgtacagcgtgttggaggatggctgcaagagt
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtagacattgctccaatggacatcggaggagcagatcaagaattcggagtggat
ataggcgccgtctgcttcttgtaa
DBGET
integrated database retrieval system
