Candidatus Planktophila dulcis: A1s21155_00670
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Entry
A1s21155_00670 CDS
T05051
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plak
Candidatus Planktophila dulcis
Pathway
plak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1s21155_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plak03400
]
A1s21155_00670
Enzymes [BR:
plak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1s21155_00670
DNA repair and recombination proteins [BR:
plak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A1s21155_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASY11529
UniProt:
A0AAC9YSR6
LinkDB
All DBs
Position
135543..139028
Genome browser
AA seq
1161 aa
AA seq
DB search
MRGILAVLHSDTEVASALLDSSKIIAPASSYPFLIALKAQEKPLLVITSSSRGAEDVSEY
LRSLHSHVYEFPAWETLPHERLSPRSDTVARRLSTLYSLQEKQNNPVVVAPVRAVIHRFI
ASLAKKELWTLEIGQEIGLTELINHLTELSFTRTDLVEKRGEFAVRGGIVDVFLPLAMHP
VRIDFFGDEIEELQYFEVADQRTSEPVVGKLAILPCRELLLTDAIRERAEKLKSQYPSAL
EILDKIAQGMIVEGMESLIPLLTDDFETILDRMPQGTEVFFIDDERIRSRTADLIETNQE
FLEASWSNAAIGGVAPLPVEQVTYLDWKALQDEIARLSLPVRALNAFGSDLDEDARFLDI
SAIDPMRANVEALCELLRTGLEAHHSVVFSTTGHGMAERYAGIFRDADLPVQMVETLAAQ
PTKGSIHVTQSSLGYGFKSDHAQILFVTERDLSGSKTSTKDGARMPSKRKQAIDPLELHT
GDFVVHEQHGIGRYVELVQRTVGGVTREYLVIEYAPAKRGQPSDRIFVPTDTLEQVSKYV
GGETPTVHRIGSGEWQKAKGRARKAVRQIAGELIRLYAARTSAPGFAFSPDTPWQRELED
AFSYIETPDQLSTIEDVKRDMERPYPMDRIICGDVGYGKTEIAIRAAFKAVQDGKQVAVL
VPTTLLVQQHSKTFAERYAGFPIKVAGLSRFNTAKESKVILAELTSGVVDVVVGTHRILS
QDVQFKDLGLVIVDEEQRFGVEQKESLKKMRTTVDVLAMSATPIPRTLEMAVTGIREMST
ITTPPEERHPILTYVGPAEDAQIKAAIHRELLRDGQIFYIHNRVESIDRAASKLQELVPE
ARIRIAHGQMSEGQLEDVILAFWNRDFDVLVCTTIVESGLDIANANTLIVERSENFGLSQ
LHQLRGRVGRGRERAYAYFLYPQDQPLSEVALDRLKTIATNTDLGSGMRVALKDLEIRGA
GNLLGGEQSGHIADVGFDLYMRMVGEAVNDYKTGFIETEEKNHECKVELPINAHLAEVYV
PGERLRLDLYRRLADVRTSADVESIREELVDRFGELPQEAQSLLQVAQFRASAKALGVRE
VVAAGKFLRISPLVLPESKQLRLNRLFPGSLYKSATNTVMIAIPRAAAWTPTAQGSQLIG
DTSLLEWAAKSLDELTKASTT
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaattctcgcggtattacatagtgataccgaagtagcttccgcgctccttgat
tcctccaagatcattgcaccagcatcgagctacccattcctgattgctctcaaagctcaa
gagaagcctctgctggtcatcaccagctccagtcgtggcgcagaagatgtgagtgaatat
ctcagaagccttcactcacatgtctatgaatttcctgcgtgggagacgctgcctcatgaa
cgcttaagcccacgcagtgacactgtggcgcgcagactttcaactttgtattcgcttcaa
gaaaaacagaacaaccccgttgttgtcgcacccgtgcgcgcagtaattcatcgctttatt
gcatcccttgcaaagaaagagctgtggacattagagataggtcaagagattggtcttact
gaactcatcaaccatctgactgaactttcatttacgcgaactgaccttgttgaaaaacgt
ggagagtttgctgtgcgtggcggcattgtcgatgtcttccttccacttgcgatgcaccca
gtacgtattgatttcttcggtgatgaaattgaagagcttcagtattttgaagttgcagat
caacgcaccagtgagccggtcgtaggaaagctcgcaatcttgccttgtcgcgaattactt
cttacagatgctattcgtgagcgagcagagaagttaaagagccaatatccaagtgcgtta
gagattctagacaagattgcacaaggcatgattgttgaaggaatggaatcactcattcca
cttcttaccgatgactttgaaacgattttagatcgcatgccccagggcaccgaagtattt
tttattgatgatgaacgcatccgctctcgcacagcagatctcattgagacaaaccaagaa
ttcctcgaagcatcatggtctaacgctgcaatcggtggtgtggcgcctttgccagttgag
caagtgacttatttggattggaaagcactacaggatgagattgcacgcctttctcttcct
gttcgcgccctcaatgcatttggaagcgatctcgatgaagatgctcgttttctcgatatt
tcagcgattgatccgatgcgcgcaaatgtggaagcgctctgcgagctactgcgcactggc
ttagaggcgcatcacagcgttgtattttcaacgacagggcatggaatggctgagcgatat
gcaggaattttccgtgatgcagatctgccagtgcagatggtggagacccttgcggcccaa
ccaacaaaaggctcaattcatgttactcaatcctcactcggatatggctttaagagcgat
catgcgcagattctctttgttacagaacgcgacttatctggaagtaagacgagtacgaaa
gatggtgcacgcatgccatctaagcgaaagcaagccattgatccccttgaacttcacaca
ggagattttgtagtccatgagcaacatggaatcggtagatatgttgaattagtccagcgc
acagttgggggagtaactcgcgaatatctagttattgaatatgctccagcaaagcgcggg
caaccaagtgatcgcatctttgttccaaccgatacgttagaacaggtcagtaagtatgtg
ggtggtgagactcccactgtgcaccgcattggaagcggtgaatggcagaaagcaaaggga
cgtgctcgaaaggctgtgcgccagattgctggtgaactcattcgattgtatgcagcccgc
acaagcgcaccaggctttgccttctcaccggatactccatggcagcgcgaattagaagat
gcattttcctatattgaaactcccgatcagctatcaacgattgaagatgtgaagcgcgat
atggagcgcccatacccaatggatcgcatcatctgtggtgatgtgggatatggaaagacg
gagattgccattcgcgctgcctttaaagcggtgcaagatggaaagcaagtagcagtcctt
gttccaacaacgcttcttgtgcagcagcattccaagacttttgcagaacgttatgcaggc
tttcccatcaaggtagctggcttatctcgctttaatacagcgaaggagagtaaggtgatt
ctggcagagctgacatctggcgttgtcgatgtcgttgtgggtacgcaccgcatcctttcg
caggatgtgcaatttaaggatttaggtcttgtcattgttgatgaagaacagcgctttggc
gttgagcagaaagaatcacttaagaagatgcgcacgactgttgatgtcttagcgatgtct
gcaacacctattcctcgcacccttgagatggcagtgacaggtattcgcgagatgtcgacg
attacaacaccaccagaggagcgccatcccatccttacctatgtggggccagctgaggat
gcgcagattaaggctgctatccaccgcgaactacttcgtgatggtcagatcttctatatt
cataatcgcgttgaatctatcgatcgcgctgcatcaaagttgcaagagttagttcctgaa
gcacgcattcgtattgcacatggccagatgtctgaaggacagttagaagatgtgattctt
gctttctggaatcgcgactttgatgttctggtctgcacgacaatcgttgagagcggactt
gatattgccaatgcaaatactctgatagttgagcgctctgagaattttggtctctcacag
cttcaccaattacgagggcgcgtgggccgtggacgtgagcgtgcctatgcctacttcctc
tatccgcaagatcaacccttatctgaagttgcactggatcgattaaagacgattgctaca
aataccgatcttggttcaggaatgagagttgcactcaaagatcttgaaatacgtggagcc
ggcaacttactcggcggtgagcaatcaggacatattgctgatgtgggattcgatctctat
atgcgcatggtcggtgaagcggtcaatgactacaagacagggtttattgaaacggaggag
aagaaccacgagtgcaaagtggaacttcccattaatgcgcacctggcagaggtatatgtt
cctggagagcgtcttcgtttagatctctatcgccgtttagctgatgttcgcaccagcgcc
gatgttgaatctattcgcgaagagctcgttgatcgctttggtgaacttccacaagaagca
caatcacttctgcaggttgcacaatttcgagcatctgcaaaggcgctgggagtcagagaa
gttgttgctgctggtaaattcttgagaatttcaccgctggtcttgccggaatctaaacag
ctccggctcaaccgacttttccctggttcgctctataaaagtgcgacaaatactgtgatg
attgcaattccacgtgcggcagcatggacgccgactgcacaaggctctcaacttataggg
gatacttctcttctggagtgggcggctaagtccctcgatgaattaacgaaagcgagcact
acgtga
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