Candidatus Planktophila dulcis: A1s21155_00820
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Entry
A1s21155_00820 CDS
T05051
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plak
Candidatus Planktophila dulcis
Pathway
plak03420
Nucleotide excision repair
plak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A1s21155_00820
03430 Mismatch repair
A1s21155_00820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plak03400
]
A1s21155_00820
Enzymes [BR:
plak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A1s21155_00820
DNA repair and recombination proteins [BR:
plak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1s21155_00820
MMR (mismatch excision repair)
Other MMR factors
A1s21155_00820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
TetR_C_34
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ASY12676
UniProt:
A0AAC9YU99
LinkDB
All DBs
Position
166775..169951
Genome browser
AA seq
1058 aa
AA seq
DB search
MIISIDPTFHLPSDEQRPIISIHDNPLEPAVVIAGAGSGKTETMAARVVYLVANEIARPD
QILGLTFTRKAAGELNTRIRKRLRQFQQAQDKQGIARTFSSLDTAVTTYHSYAGRLLSEH
AIRYGIDADVQPLGEAAVWMSANKLVREWDDGTFATSDAASTVVKDLLGLTSMVLEHRVT
VDQIRDADEKVLHEVAQMTGATNEETRKAAKVLNQRIAMLPMMQAFLEARRQSGELSFDD
QIALAADIAVNFPDVGVLERAKYPIVLLDEYQDTSQSQVRLLSALFGGGHPVTAVGDPCQ
SIYTWRGASSGTISAFNANFPKSDGATGKNVYELLTTYRNDESILTLANAISADVRKDEG
ITVAALKPRKGAGKGNLTCGVFENLEGEATAIAEYFTPLWSNPERLKVGSKVPKTFAVLV
RKRAQIALIQEALAKAGIPSEVLGLGGLVHVPEIADLVAMLKVINNPDAGASLMRHLTGP
RINLGPRDIAALGRFARSRSESLSADSRSIVKNIVAGNPQSAEADDQFIGSVIDALDEIE
KCEQSKFSTVGYERLTTFASDLRRLRARASAPITDLIVDIERYLNLETEVMLRDGGTHGR
RHLDRFMDEAAKFARSGGTLTAFLQWLDVASEEEGGLKAGTPDVDASVVQILTIHMAKGA
EWDVVAVPGLAEGTFPGANSSDPDNWITNERHIPFSLRGDKDILPVFSWNAATTNAAAKK
AIDAFADQCVDFKMREEIRLGYVAITRARTYLFCSTSFWRDGAKPVAPSVLYEKVQEVAS
AVGTVISAPIAPASTDRNPAKDIEITAQWPRDPLGNRRADFDRTVALVESASPINLEGNF
HDGLRDFADDARAIIAEFNEYKAGAHSVALPPRLSTSTLIALHENPAELARTIRRPMPRA
MDEYSHRGTAFHIWIENHFNAKTLFDDEDFDLLTPFEEDQKLEDLKAKWLASSWASLQPH
AVEVPFETVIAGILVRGRIDAVYKTDSGFEVVDWKTGSKVLGDSSAVQLAVYRLAWAKLQ
GISVDQVTAAFHYVPTSTTDRRANLLSEGQLIDLLSVK
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgatcatctcgattgatccaacattccatctaccatctgatgagcagcgcccgattatt
tctatccacgataatccactggaacctgctgttgttattgctggtgctggatctggaaag
acagagacgatggcagcgcgcgttgtctatctcgttgcaaacgaaatagctcgccctgat
caaattctgggtcttacctttacgcgcaaggcagcgggtgagctcaatacacgtatccgc
aaacgacttcgccaattccagcaggctcaagataagcaaggaatagcgcgcacttttagc
tcactcgataccgcagtaactacctatcactcctatgcaggacgtctcttgagtgaacat
gcaattcgttatggcattgatgctgatgttcaaccactgggtgaagccgctgtgtggatg
tctgccaataagttggtgcgtgagtgggatgacggcacctttgcaaccagtgatgccgca
agcacagtcgtgaaggatttactgggtcttacatcgatggtcttagagcaccgagtaacg
gtggatcaaatcagagatgctgatgagaaggtattgcatgaagtagcacagatgacaggt
gctaccaatgaagagactcgtaaggctgccaaggttctcaaccaacgcattgcgatgctg
ccgatgatgcaagccttcttagaggcacgacgtcaatcaggtgaactctcattcgatgat
cagattgcacttgctgcagatatcgcagtcaacttccctgatgtgggagtgttagagcgc
gctaaatatccaattgttctgctcgatgaatatcaagatacatcgcaatcacaggtgcgc
ttgttatctgctctctttggtgggggacacccggttacagccgtgggcgatccatgccaa
tctatctacacatggcgcggtgcatcatctggcaccatcagcgcatttaacgcaaacttt
cctaaatcagatggcgcaacaggtaaaaatgtctatgaactccttactacctatcgcaac
gatgaatcgattctcactcttgccaatgcgatttcagcagatgttcgaaaagatgaaggc
atcactgttgcagcgctaaagccacgtaagggtgctggaaaaggaaatctcacctgcggt
gtatttgaaaaccttgaaggtgaagcaactgctatcgctgaatacttcacgcctttgtgg
agtaatccagagcgcctaaaggttggcagcaaagttccaaaaacatttgccgtattggtc
cgaaagcgcgcacagattgctctgattcaggaagctcttgcaaaggctggaataccttct
gaagtccttggtttaggtggacttgtgcatgttcctgagattgcagatcttgttgcaatg
cttaaagtaatcaataacccagatgcaggtgcctcactcatgcgtcacctgacagggcca
cgtatcaaccttggaccgcgcgatattgcagctttgggccgctttgctcgctcacgctct
gaatcactttcagccgatagtcgcagcatcgtaaagaacattgttgccggcaatccacaa
tctgctgaagcagatgatcaattcattggaagtgtcattgatgcactcgatgagattgaa
aagtgcgagcagtcaaagttcagcacagtgggatatgaacgcctaactacctttgcatct
gacctacgtcgtctgcgcgctcgtgcatctgcgcccattacagatctcatagttgatatc
gagcgatatttgaacttagagactgaagtgatgttgcgcgatggcggaacacatggtcgt
cgccatcttgaccgctttatggatgaggctgcaaagtttgctcgtagtggtggaaccctc
accgctttcttgcaatggctcgatgttgcaagtgaagaagagggtggccttaaggctgga
acacctgatgttgatgccagcgttgttcagattctcaccatccatatggcaaagggagct
gaatgggatgttgttgctgtcccaggacttgctgaaggaactttccctggggctaattca
tcagatcccgataattggattaccaatgaacgacatattccattctcactgcgaggcgat
aaggatatcttgcctgtcttttcttggaacgcagcaactaccaatgcagctgcgaagaag
gccattgatgcatttgctgatcaatgtgttgatttcaagatgcgggaggagatccgcctt
ggctatgtcgccatcactcgtgcccgcacatatctcttctgctcgacatctttctggcga
gatggtgcaaaacctgtggcaccttctgttctctatgaaaaggtgcaagaggtcgcaagt
gctgtgggaacagtgatttcagcccccattgcacctgcaagcactgatcgaaatcctgcc
aaagatattgagattacagcgcagtggccacgagatcctctcggtaatcgccgtgcagat
tttgatcgcacagtagctcttgttgaatcggcatcgcctataaatcttgaaggtaacttt
catgatggacttcgtgattttgcagatgatgcacgcgccatcatcgctgaattcaatgaa
tacaaggcaggtgctcacagcgttgcactgccaccacgcctttccacatcaactcttatc
gcactgcatgaaaaccctgctgaacttgcacgcactattcgccgcccgatgccacgtgct
atggatgagtactcacatcgtggaacggcatttcacatatggattgaaaatcacttcaat
gcaaagactctctttgacgatgaagatttcgatctgctcactccctttgaggaagatcag
aagcttgaagatctcaaagctaagtggcttgcatcaagttgggcatctttgcaaccacat
gcagttgaagttccttttgaaactgttattgctggaattcttgttagaggtcgtatcgat
gctgtctataagacagattctggttttgaagtggtggattggaagacaggctctaaggtc
ttgggtgattcatctgccgtgcagcttgctgtctatcgcttagcgtgggcgaagttgcag
ggaatttcagtagatcaagtgactgcggcatttcattacgtgcccacaagtacaacagat
cgacgagcaaacctcttatctgaaggtcaactcatcgatctgttgagtgtgaagtag
DBGET
integrated database retrieval system
