Candidatus Planktophila dulcis: A1s21155_02870
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Entry
A1s21155_02870 CDS
T05051
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plak
Candidatus Planktophila dulcis
Pathway
plak03030
DNA replication
plak03430
Mismatch repair
plak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A1s21155_02870
03430 Mismatch repair
A1s21155_02870
03440 Homologous recombination
A1s21155_02870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plak03032
]
A1s21155_02870
03400 DNA repair and recombination proteins [BR:
plak03400
]
A1s21155_02870
Enzymes [BR:
plak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A1s21155_02870
DNA replication proteins [BR:
plak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A1s21155_02870
DNA repair and recombination proteins [BR:
plak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A1s21155_02870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
ASY11919
UniProt:
A0AAC9YTG6
LinkDB
All DBs
Position
557775..561308
Genome browser
AA seq
1177 aa
AA seq
DB search
MSSEDFSASRASTQDSFVHLHVHTEYSMLDGAARVGDLVNEVARQEMPAIAMTDHGNVFG
AFDFYKQATKAGVKPIIGIEAYVAPESRFDKKRVQWADGGEDDVSGGGAYTHMTILAENN
VGLANLYKLSSLASLEGYYYKPRMDRELISRHADGLIATTGCPGGEIQTRLRMGNYKEAM
RAASDYRDIFGADNFFLELMDHQIDIETRVKDDLLKLAKELKLPLLATNDLHYTRYEDAA
AHAALLCVQSGSTLADPKRFKFDNDEFYLKTPAQMRELFKDIPESCDNTLLIAERCNVTL
RENENLLPAFGVPEGETEDSWLRKESVRGLLEKMGDRATEEYRTRLQYELDVMVKMGFPG
YFLVVADLVGHAKKVGIRVGPGRGSAAGSLVAYSLGITGLDPIEHGLLFERFLNPERISM
PDIDLDFDERRRSEMIRYATEKYGEDRVAQIITYGTIKSKQSLKDATRVLGFPYAIGEKL
TKALPPSVMGKDITLSGIFDSGDTRHGEAGEFRQLYETDPDSKRVVDLAKGLEGLKRQWG
VHAAGVILSREPLLDVIPIHRREADGAIITQFDMGACEATGLLKMDFLGLRNLSVLDDAL
LNIKANRDIDVVLEDLPLSDQKTFELLSRGDTLGVFQLDGGPMRALLRSMSPDSFADISA
VIALYRPGPMGENSHNNYADRKNGRKPVEPIHPELSEPLQEILGSTYGLIVYQEQVMAIA
QKVAGFTLGRADLLRKAMGKKNKEILDKEYIPFEAGMKENGFSVSAIKRLWEVLIPFSDY
AFNRAHSAGYGVVSFWTAYLKANYPTEYMAALLTSVRDDKDKSALYLSECRRMGIKVLPP
DVNESDAEYTPRGVDIRFGLAAIRNVGEGVVASVKASRASKGAFTSFGDFLAKVDANVCN
KKTIESLIKAGAFDSLEHPRKGLMAIHLEAIDSVIETKRAEAIGQFDLFGGDSISQVASL
DIEIPATEWDKSTLLTFEREMLGLYVSDHPLLGVEHVLRSHTDMTISQLLEDGPQDGMVT
IGGLITGIQRKVSRQGASWAVVNVEDLEGAIEVLFFSNTYNQYALSLTEDRVVVVRGRFS
RTDEQVRFTALEMKMPDISAAPMGPLLISLPAAQVTPPIVDRIKEILRSHPGKREVHLQV
IDQQKSTTMKIDALVTSSPSLSADLKAILGPDCLVRI
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaagatttttcagcttcacgggcatcgacgcaagactcgtttgtacatctt
catgtgcataccgagtactcgatgctcgatggtgccgcgcgcgttggagatctggtaaat
gaagtagctcgccaagaaatgccggcgattgcgatgacagatcacggaaatgttttcgga
gcatttgatttctataagcaggcgacaaaagcaggcgttaaacccatcatcggaatcgaa
gcctatgtagcacctgaatcacgttttgataagaagcgtgtgcagtgggctgatggcgga
gaagatgatgtctctggtggtggtgcatatacccacatgacgattttggctgagaataat
gtcggccttgccaatctctacaaattatcttcccttgcatcccttgaaggttattactac
aagccacgtatggatcgagagctcatctcgcgccatgcagatggattgattgcaacgact
gggtgtcctggtggtgagattcaaacccgtcttcgcatgggcaattacaaagaggccatg
cgagcagccagtgattaccgagacatattcggtgccgataacttcttcctagagttgatg
gatcaccagattgatatcgaaacccgcgttaaggatgatctccttaaattagcgaaggaa
cttaagttgccattgcttgcaactaacgatcttcactacacgcgatatgaagatgctgca
gcccacgctgccctgctctgcgtgcaatcaggttccactttggcagatcccaagcgcttt
aaattcgataacgatgagttctatctcaagaccccggcgcagatgcgcgagctctttaaa
gatatccctgaatcatgcgataacacccttctgattgctgagcgttgtaacgtcacactt
cgcgaaaatgagaacttgcttccagcatttggagttcctgaaggtgagactgaagactcc
tggctacgtaaagaatcggtgcgcggactccttgagaagatgggcgatagagcaactgag
gaatatcgcacgcgtttgcaatatgaactcgatgtcatggtcaagatgggatttcctggt
tacttccttgttgtggcagaccttgtgggacatgcaaagaaggtgggaattcgcgttggt
ccaggtcgaggatcagcagcaggttcacttgttgcatattcattaggaattacaggactt
gatccgattgagcatggactcttgtttgagcgattccttaatccagaacgtatttcgatg
cctgatatcgacctcgacttcgatgaacgtcgccgctcagaaatgattcgttatgcaaca
gagaaatatggtgaggaccgtgttgcacagattattacctacggaacgattaaatctaag
caatctctgaaagatgcaacgcgcgttcttggttttccatacgcaattggtgagaagtta
acgaaagcccttccaccatctgtcatgggtaaagacatcactctctctggaatctttgac
tctggggatacacgccatggtgaagcaggcgaattccgccaactctacgaaactgatcct
gactccaagcgcgttgttgatttagcgaagggccttgaaggcctcaagcgtcaatgggga
gtgcatgcagcgggtgtcattctctctcgtgagccacttcttgatgtcattcctatccat
cgccgtgaagcagatggcgccatcatcacgcaatttgatatgggcgcatgtgaagcaaca
gggttgctcaagatggacttcctggggcttcgtaacctctcagttctcgatgatgcactt
cttaacatcaaggcaaatagagatattgatgtagtccttgaagatttgccactcagtgat
caaaagacattcgaacttctctctcgcggtgacacactcggagtctttcagctcgacggt
ggaccgatgcgcgcacttctgcgcagcatgtcacctgactcttttgcagatatctcagct
gtgattgctctctatcgcccgggacctatgggtgagaattcacataataactatgcagat
cgtaagaatggtcgcaaacctgttgagccaattcaccctgaactatcagagccgctacaa
gaaattcttggtagtacatatggactcattgtctatcaagagcaggtaatggctattgcc
cagaaagttgctggctttactctcggtcgcgcagatttacttcgtaaggcgatgggtaag
aagaataaagagatccttgataaggagtacatcccctttgaagctggcatgaaagagaat
ggcttctcagtcagcgccatcaaacgtctatgggaagttttgattcccttctctgattac
gcatttaaccgcgcacatagcgccggctatggcgttgtctccttctggactgcatatctg
aaagcaaattaccccactgaatatatggctgcgctattaacaagtgtgcgcgatgataaa
gataaatctgcgctctatctctctgagtgccgccgtatgggaatcaaagtcctgccacct
gatgtcaatgaatcagatgctgaatacacaccacgtggagtagatattcgctttggcctt
gctgcgattcgtaatgtgggtgagggtgttgtcgcatcagtgaaagcatcacgtgctagc
aaaggtgcctttacatcatttggtgatttccttgccaaagttgatgccaacgtctgcaat
aagaagactattgaatccctgattaaggccggtgcattcgattcactagagcatccacgt
aaggggctgatggcaatccacctggaggcaattgattcagtgattgagactaagcgcgct
gaagcaattggtcagtttgatctctttggcggagattcaatttcgcaagtggcaagtctt
gatattgagattccagcaactgaatgggataagtcaacgcttcttacctttgagcgcgag
atgttaggtctctatgtttcagatcatccacttcttggcgtggaacatgtgttgcgatca
catacagatatgactattagccaacttctggaagatggaccacaagatggcatggtcacc
atcggtggattgattacaggtatccagcgcaaagtctcacggcaaggcgcctcatgggct
gttgttaatgttgaggatcttgaaggcgccattgaagttctcttcttctccaatacctat
aaccaatatgcgctctctcttactgaagatcgcgttgttgttgttcgcggacgcttctct
cgcacagatgaacaagtgcgatttaccgcacttgaaatgaagatgccagatatctcagca
gctccgatgggaccgcttttgatctcacttccggctgcacaagtaactccacctattgtc
gatcgcatcaaggaaatcttgcgttcacatcctggaaagcgtgaagttcatcttcaagtc
attgatcagcagaaatcgacaacgatgaaaattgatgcactcgtcacatcttccccaagt
ttgagcgcagatctcaaggcgatacttggcccagactgtttggttcgcatctaa
DBGET
integrated database retrieval system
